HsaINT1017580 @ hg38
Intron Retention
Gene
ENSG00000134539 | KLRD1
Description
killer cell lectin like receptor D1 [Source:HGNC Symbol;Acc:HGNC:6378]
Coordinates
chr12:10304446-10308084:+
Coord C1 exon
chr12:10304446-10304547
Coord A exon
chr12:10304548-10307977
Coord C2 exon
chr12:10307978-10308084
Length
3430 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCTTCATACTCAACTTTCAGATT
3' ss Score
9.29
Exon sequences
Seq C1 exon
GTTTTGCTCTTGTCACCCAGGCTGGAGTGCAATGGTGCGATCTCAGCTCATCAAGTTCAAGAGACTCTAATGCCTCAGCCTCCCAAGTAGCAGGGGTTACAG
Seq A exon
GTGAGTGCCACCATGCCCGACTAATTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGGCCAGGCTGGCCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTTGGCCTCCAAAAGAGCTGAGATTACAGGCGTGAGCCACTATGCCCAGCCTTAGTTTTATTTTTTTATTTGATTTTACCACTAACAATTTTAGACAATCTAATACATCCTGCTAAAATCATTCCATTGATAAGGATTTTGCAAGCAAAACACACTATATATAAGAAACCACTATAGCTAGTAGGTTTGTTATTAGCATGTTTACAATGAGATTTTACCAGGTCAGTAACGTCTTTTGTTTTTTCTCAGGGAGCCCTCTCTCTCTGTTAAAAGAATAATTTGCAGCCTGATGTGAGCAATTTTCTTTCCGCTCAAAGAATGCATTTTCTAAAAGCAGTGAGATCAAAATAAATTTTTCCCTTGGGGATACTAGAACGTATACTGTTATTTTGTTCTGCAACATTTTAGTTATACATTTTTAGGTAGGGAAAAGACTTCACTGTTTATATGTTAAGTGAACATTAGTTTCTTTTCCCTGGCTTTTGACTAAGGTTTAAAAGTTGACTTAGCTATTGAAGTCATCACTTGCTCTTACCAAGGGCACTAGTAAATTGCAGGGGAGGAAGAGGGCATCTTCCTGCAATGGATACTAGGGGATGGAAAGTCCTGCAAAGAGAGACGTTCTTTTGGCAGGATACCTAACTTTTCAAAAGCAAATTTATGTAAGTGAAGCTGGATATTTCAGCGGAATTTAGTCTGGTTTCTCTCGGCAGCACACTCAGAGAATACTTTGAGTAGAAACTTTATTTGGAATTGTGTATGCAATAAATGTAGGAAAGGAAATGTAATAGGAAAGGGAAAGTGGAACGCAATAAAGGTTATTTTCTTAATCTAGCTTCTAGAGGAGGTGACTGGAACATAACACTATTGAGTAATTCTGGGAACTGGGCAAAACACAATGTTCAGAATTACCTGACTTTAGGGCTGAGACTGCTGGACTGTATAGCAAATCACAAGATTCGTTTGTTGACGCCCATTCTGGTGATGATTATTCAGCACTTCCGGATTAGCATGTCTGAGAACAGCAAGGCTTTCAGCAGTTATTGGAGAAAAAAAGAACCCATAGATACAGCTATACAGATAACTAGTTGGCCATAGTTCCCCAAATATTCCAAGGGACATAGGCGAGGCAATGATAACTTCAGGAACAAGTGGAGATGAGTGGGAGAGATACAGTACATGGAAATCATTCACCTGTCTACGTACAAAAATAAATAGAAAGAACAGAGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACAATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAAAAAAAAATACAAAAAATTAGCTGGGCGTGGTGGCGGGAGCCTGTAGCCCCAGCTACTCGGTAGGCCGAGGCAGGAGAATGGCGTGAACACGGGAGGCGGAGCTTGCAGTGAGCCGAGTGAGCCACTGCACTCCAGCCTGGGTGACAGAGACTCCATCTCAAAAAACAAACAAACAAAAACAAACAAAAAAAGAACAATCAGAGTTGGCAGCTCAGAAAGAGTTAAAGAGGTATATACATATATGTTTACTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTTTAGGTATCTTAAATATTTAAGCCTGGAGTTCTTGAAGTAAACTTGTATTTGTTGGATTTTTATTTCTAAGTCAGTGAACTAAGATGAAAAAAAGGACAATGACTGATGGACGTATTCTCACCAAACAGGGTTCTAAAAACTTAGAACCTCTAACTTCCAAATAAAGGTGGTTGTGTTAGTAATGAAAGTGTAGTAATAATCCCTATTGCACATTCTGTCATAAATTTGTACTCTCTCAAGAGAAAAACTAAAAGCAAACCCCTAATCTCCTATATTTTGAGGCAATTTTACATGGGGGAAAAATAGTATCAGACAGGTTTCTTCCAGACCAGCTTTTTCTAACACTAAAAATGAATAGATTTCAAGTAAGCAAAGGATTTTTAAATAAATCACTTCAACTAAGATTTGCATACAGTCTGGATGAAGTAGATTTTACGCTTATATTCTTCAGTGAGGATTTATAGCTCAACAAATTTGTTGGTGCAATGAAAGCAGCTCTAGGCACACAATGCAAACTGAAAAGATGGAAAGTTTTGACTTCATAAAAACTGAGAAGTCAAAGTAGTCTTTTCTTTCATTTTTTTCTGTTGTTGGTTGAAAGCCCATCTTTTACAAAAGGGTTTATCTATAGTAATATTATAATGCTTGAACATAAACAATATACAAAATATAATACACAAAACGTTTATTTGAGTGTCTGCTTTTGTATGGGGGTGCATGGTAGATTGTATTTCCAGATACTAAATCATGGATCGAAATCTCTCCTTTCAAGATTCTTATTATAGCCAATCTCTTCCACATTGGAAATTTGACCTGTTCCACATTTGATATTCCTATTAACAAGGTTACTCTTCTGTAGATGAAAAAGTGTATATCGAAGTATCAGTATAGTATCTGAATTAGATAACACACTAAACAATATAATAATGTATTAGTAAAAATAAGGAAAATAAAGAAGCTGAAGTCGTGCTTAAAGAACTTTAAGAAAATGAAAATTGAGGTGTTGAAAAAAGCTTTTAAGGCTAACGTGAATGAGGCGTCCAAGTGGGAAACCCATCCAGTTCTACTTTTTTGAACTTTGCCTGTCGTGGCCAGGATAATTAGGTAGAGATCAGAAGAACAGAGTGAGACATGGAAATCCCAATTTATGTGACCTTGGGCAAATTACTTAGCTCTGTATGCCTCAGTTTTCTCTTTGATAGATTGAAGATATTTATATATCTTTACTATCAAGCCATTTACAGAAATAAATGAGCTAAGATATGCCAAGTGCTTTAAATTGTGTTAAGTACAAGGTAAATAATAAATGTTTATTATTAAAAGAGGAAAATTCTGTAAGTAATTTTGTTATGCTAAGTAAATTTACCTTTGGTTTGCCCATCATTTCCTTCATTTTCCAGATAACCCTTTAAAATGAATTTGATTTTCAAACAATAAAAAACAAAACAGCAACAAAACTCCCTCTGACCTCCTCTCACCTTCTTTAGTCCTTGCCAAAGTGTTAATATTGCAAAAGTACTGTGAGAATTTCCTGTATTGTGGTTCCTGGAACACTTCAGAGGCTTGTGATTCTACTGCTTCTTATTCACACTATAATACATGTCTCACCAATAGATGATTCAAGAACATCATTTAAATACACAATTTTTCATTCTCTATTTTTGCTAAATTTCTTCATACTCAACTTTCAG
Seq C2 exon
ATTCTTTAATCTCCAGCTCAGCTTCAACAATTCAACGCTGTTCTTTCTGAAAAAGTACACATCGTGCCTTCTCTACTTCGCTCTTGGAACATAATTTCTCATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134539:ENST00000381908:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains