HsaINT1018819 @ hg38
Intron Retention
Gene
ENSG00000214851 | LINC00612
Description
long intergenic non-protein coding RNA 612 [Source:HGNC Symbol;Acc:HGNC:28621]
Coordinates
chr12:9057620-9065070:-
Coord C1 exon
chr12:9064268-9065070
Coord A exon
chr12:9058877-9064267
Coord C2 exon
chr12:9057620-9058876
Length
5391 bp
Sequences
Splice sites
5' ss Seq
TAGGTACTA
5' ss Score
4.64
3' ss Seq
ATTTCTCTTATTTTCCTTAGCTT
3' ss Score
7.49
Exon sequences
Seq C1 exon
GCCCCGGGGCTCAGGGGCAGCCCAGGACTCTCCCTCGCCCGGCTCACGGCCCTGCCTGGGGGGCGCCTCCGGGAGCAGATCACGAGCCCTGGGGCTCAGCCCTCAGGCGCGTCTAGCTCGGCGGTCACCCCAGTGCCGGGAGGACCCTGAAGACGCGCCCCAGGCGGCCCTACTCAGAGCCTCCTCCCAAGGCCCAGGAATGCGGCGCTGTCGGAGGTGTGCGCGGTGGCCACACCGCTGTCCGGGTCCCCAAAGCGGGCCCCGCTCCCACTTCTCGCCTTGGCCCCGAACCCTGGGTCCAGCCCCAGCGCTTTGTGTGCGAACACCGCTCCGCCCCGGACCCAGCTCCGCCTTGGGGCCCCTCTCTGCCTGCCCCTCCGTGCCCGACTACACTGCTTCCCCTCCGGCGGGCGACTCAGCCCGGTCCATCGTGGCGGCTTCCAGGGCGGCAGGCTCCGGGAGTACTCCCGGGGCCGGCTCCAAGGACTGTTCCCCTCCTCCCCACTCCCACTCCGCGGCGGCGGCGGGCGAGAGCGGCGACATAGGGCCAGGGTCCGGAGCGGTGGAGGCTCCTGGCCGGGGAGCACGTCGCCCCACCCGGCAACGCGAGGATGGTGGCGGCGCAGTCGGCTGCTTTGGGGTCTCAAGGCACAGGGGACGCGAGGCACAGATGTCCCACAGCAGCCACTGCGGCTCCCGCAGCTGCTCCGCCGCCGCTGCCCGCCCCTCCCTGCTGCAGCTGGCGTGATGGCAGCGGCAGCTCTGGACGCCCCACTGCTGCCACCATCAGCCTTGTGAAATAG
Seq A exon
GTACTACCTTAACAAATGAAATTGAAGCAGAGACATGTAATTTGCCCAAAGTTACTAAGTTAGTGACAAAGCTAGAATTCAAGACCAAGAAGTCTAGCTTCCATGCTCTTAACTTCCAACCATGGTGACACCTCAAACAACTTCAGACAAAAAGGCCAGGAGAAAGTATATTTCAGAGCTTAATAAACATTATAATTAGCTGTCAAATTAAGTATCAAGCCAGGGCACAGAACATAAAAGAAATCAGAGTATGGCTATGGGAACAAGACAACAGGATTATAATTTTACCTCTTGGTTCTAGTTTTTTTCTTTGTTCATATGGAAATCGTTACTGAAAAGGTACTTTAAGGATATGCTTGTTGCAAATCATTAGCTGTATCACTGACCAAGAGTGTTTATTCCTGAAATACTAACTGATTGCCTACTATCTGCCAGGCACAATATCCCATGCTATAATACAAAATTAAACAAAATAGGATTCCTCCCTTAGAAAAACTCACCGCAGAGTAAAAGAAAAAGATACACATCTGGGTCATTATAATGATCAGGTGCTCAAGCTATTCATTGCCCCAGTGGACTGGAGATACAATGGCCTTCTCAAGTTTTGGGGTATTACACTCAAATTCATATGTAATACTGGAGAAAAGGCCTAATTACAACTTAAACTGGATTTCCCACCAGCCTGGTGGCATGGGAATCTTGGAATTAAAATTACGTAGAATTTTTAAAAGTGATGTATCTTCTACATCTGATTTTGTGAACTGAAGTTTATTCTTTCCAGGAAAGCATATAGATACACGACAGGAAATGAAATGGATACTTGTTGGGGTCAGTTTTATGTATAGTTTGTATTTTATTTTGAAATATGATACACTGCTATTCTCTTGCATTTTCTTATATGTGACTCACCACTAACCCTATATTCCCCCATTTCAGGCCAGTTGGTCATAAGCATCCATTTGCCTCAGAGAATACTGGGTTGTTATGACAAGAATATAAAGTTGGAAAGAAATAGAATATTTGAGTCTACCCTGTAAGAATAAAAAGAATAAAAGGGGTTTAAATTTATTTAGACCCTATTGTTTAATCAAGAATTCTGGCCAGGAGCAGTGGTTCATGCCTATAATCCCAATGCTTTAGGAGGCCAAGGCAGGAGGATCATTTGAGGCCAAGAGTTTGAGACCAGCCTGGGCAAATTATTGCTCGGGAAAAAAAGGTCTTATTTAGTATTTTAGTCTTTACAATGTTTTTTTCTATTATGCAATATTCTCTCAAATACTTTATGTCCATCCACGTTGTCTGAGACATGCCACTTTAACATTCTAGTTATGCTGTAGCTGTCATTTTACCCTAAGCCGTTAGTAGTACTGATCCACATAAAATTGGGCTGTTTAGGTGTTTAACTGTTTAAATGTATAATATATCTGATATATTTATATATTGTATAAAAAATCACCTAACACAATAGATATTTACTATGTCTGCTATAAATATATATCATATAACATATAACAATATATTATAAATGATAATATACTATAATATAAAATATAATAAATATATTATAAATGTACAATATATCCGATATAAATATATAAATATGTCAACTATATTATACATATAAATGTATATGTATAATATATACATATATGTATAATACAATGTATTTATTATGTATATATATAAATGTATATGTATAATATATAAATGTATAATATATCTGATATAAACATATCAGATATATTATCCATCTATTGTGTCAGGTGATTCTTTATACAATATATAAATATATCAGATATATTATCCATCTATTGTGTCAGGTGATTTTTTATACAATATATAAATATATCAGATACATTATCCATCTATTGTGTCAGGTGATTTTTTATACAATATATAAATATATCAGATATATTATCCATCTATTGTGTCAGGTGATTTTTTATACAATATACAAATATATCAGATATATTATCCATCTATTGTGTCAGGTGATTTTTTATACAATATATAAATATATCAGATACATTATCCATCTATTGTGTCAGGTGATTTTTTATACAATATATAAATATATCAGATATATTATCCATCTATTGTGTCAGGTGATTTTTTATACAATATATAAATATATCAGATATATTATCCATCTATTGTGTCAGGTGATTTTTTATACAATATATAAATATATCAGATATATTACATATCTATTGTGTCAGGTGATTTCTTATACGATATATAAATATATCAGATATATTATCCATCTATTGTGTCAGGTGATTTTTTATACACTATATAAATATATCAGATATACTATACAGTTCAGCCCATCAAAGCACCATATTTTGGGGGGTTGGTTTCCGTGTCCCAACACTAGCTACGAAAATATTAGCTATTAGCTACCTATAACTCTTCAGTAGTAAATTCAAGAAACGTAAAGTAATTCTCTTCATTAAGTTCTTGCCTTGTCTACTAAAAAAATGGTCATCACCGATGTGGACAATGAAGACCTGTGGGGTTAAAAGCTCTAACTAGTATGCCTCCAAGATTCTTTGATTGCCTGCCATCATGATCGAAGAATAAATAACTTCTTTTTCATCTTATTTATTTATTTTTTGTAGAGATAGGGTCTCGCTATGCTGCCCAGGCTGGTCTCAAACTCCTGGGCTCAAGAGATCCTTCTACTTAAGCCTCTCAAAGTGCTGGAATTACAGGGGTGAGTCACCACGACTGACCATTAATAATTTCTTTCAATGACACTTTAACATAGGCTCATTCATCTTTACCTCTAAAGAAAAGTCTTTCTGGTCTTTTTAAAATTATATTTTTTGGCCAGGCACAATGGCCAGGTGCGGTGGCTGACACCTGTAATCCTAGCACTTTGGGAGGCCAAGGTAGGAAGATTGCTTGAGGCCAGGAGTGCAAGACCAACCTGGCAAACATCTGGAAAACATAGCAAGGCCCCATCTCTATTAAAAAAAAATTAATTCTATTTTTCTAAGAGAAAAAAGATTCCCAATTCAACAACACTTTTCAAAAACTTTATCTGGCAGCTACTCAGGAGATTGAGATGGGAGGATCATATGAAGCCCAGGAATTCAAAACCAGTGTGGGCAACATAGTGAGATCCTATCTCATAAAAAAATAAAAAATAAAAAAAGCTTTACTTGGAATACAACCCATGACTCTGGTTATAAATACAAAATTCTTCAAATTCATTTAAAGGAATTTAATCCTAGCTTCTCGGATGAAAAAAGGAAATAATATTCACAATTTGATCCATCATCAGTAGACAAGTTAAATGTGTTTCACAAAAGCAAGACATATTAATTAAGCAAAATCATATTCGAGTAACCACAGGAAATATAAATATACTGTCTCTTACCTAGAGAAATCTTATAGTCTAATTGTGAAGATAGTCTTCACGTGACGAAAAAGATCATCATTAATCCAAAACATATAAGTTATAAAGAAGCGACATATACCAGCAATTCTAAAATCTGGTTAGCATCCTTTGTAGAATTTATTTTAAAATGCAGATATCCAGGTCTCATCAATAAAGATTTAATTAATTATTTTTGGGGATGTGCTCAGACATCTGCGTTTTTTGTTTTTTGTTTTCGTTTTTTTGTTTTTTGAGATGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAATGGCGCAATCTCAGCTCACTGCAACCTCTGCTCCCAGGTTCAAGCAATTCTTCTGCCTCAGCCTCCCTAGGAGCTGGAACTATAGGCGCCCACCACCACGTTGGGCTAACAGGCATCTATGTTTTTAATGAACTCTGTAGGTGGTTCTATCATGCAGTTAGTTTTCAGAACCATTCACACTGACAGTAAAGGCTATTTATTCCCAGCAGTTGAAAGACCACTAAGGACACAGGAATAGTTAGCAAAGCTACTTAAAGATGCCAGGGCTGGGGCCGGGTGCGATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCAGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAATGAAGCCCCGTCTCTACAAACAAACAAACAAACAAACAAAATACAAAAAATTAGCCGGATGTGGTGGCGGGCACCTGTAGTCCCAACTACTCGGGAGGCTGAGGCAGCAGAATGGCTTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGATGCCAGGGCTGGCTGGGCACAGTGGCTCACACCTGTAACCCCAACACTTTGGTTTGGGAGGCCAAGGCGGATGGATTGCTTGAGTTCAGGGGTTCAAGACCAGCCCAGGAAACATGGCAAAACCTCATCTCTACCAAAAACACAAAAATTAGCCGGGCATAGTGGCATGCACCTGTGGTCCCAGCTACTCAGGAGGCTGAGGTGGGAGGATAGCTGGAGCCTGGGAAGCTGCAGTGATCAGTGATCATGTCACCACACTCCAGCCTCGGTGACAGAGCAAGAACCTGTCTCAACATACATACATGCATATATAAAATTAAACATAAAAACAAAAATAAATAAAGATGTCAGGGCTTATGTTGAACCTTAACTGAGAGCAAGATTCAAAAGACACTGAGGCTTATTTTTCTTTCTTATATCTATAGTTACACAGGGAGCTGTCTAATCTTGGATGTATCCAAGTTGATATCTGGTTTTATCCATTGAAACCCACAGTGAAAATGGTAAATAGGTGCTAGGTGTTTGGATTTTTTTAATCCAATGTAAGAATAAAACAATGGTATCCTAATAATGTCAAAGCAACATTGGTCATAATCTAAGGAAATTGAATTCATATAGTACCAAATATATATTTAGCATTGTGCTAGGTGCTGATACATTCTAGATAAAAATATTACACATGGGTAACCAAAACTGTCAAATGACATTTCAGGGCAAGATATAATTAAGTACCAAAATCATTGGCATAGTCTTTAAGTACTGTGAAATGTAGAGAAAGCTGAGATGAATGGCAGTGTAGAGACAGATGGCTTTGCAAATCATCTCAGATGACTAGCTATCCAATGTGAGGACACTTCTCCCTCACCTTCAAACAAATGCTAAAGACGCCTGTTACTTAATCATATGAATATTCAATCTTGTATCTAATGTGGTGGTATTCATAATACTCTGTATATGTTTTCATCTTACTGGACAAGTGTCTTCGAACTCATTTAAATGAATTTAACCCCAGCTTTGTTTATGTATAGACTTCTTCAATCTCATAGTCTATTTGTCTCTTTGTACCCCACAGGCTTTCTTTATTCAGTAACACTGGTGATTTCTCTTATTTTCCTTAG
Seq C2 exon
CTTGAAAGATCTAGCCACGTGAGCAGGACAGAAGTGCACAACAACCATATCTTGATTTCTGTGGACCAGGTGGGGCCCCTGCCAGCCTTGCTAGACAGACCCAGGTGAACAGTCCTTCTAGGGGATCTCATCACCAGGCAAGCACGTGGTACGAGAAGAGCAGTCATTAGGAAGGCCATTTGGAAAAGCACATCCTCTCTGTTCACGTGAGATATTTTACATCCTCATTCCTCATCGCAAGCTTCCTGGGATTTGGAGTGTCACAGACAAGAGGGTTGGGGGAGGCCAGTAGGTATGGATTTGTTTATATTAAAATGAGCATATGAATATTTATATGTTTATATTAAAACATATATGTTTGTTTATATTACAATGAGCATATGAATATTTATATGTTTATATTAAAACATATATGTTTGTTTATATTAAAATGAGCATATGAATATTTCTGTATACTTCAGATAAACATTCTTTTCCATAAATAAGCTTCATCATCCAGAAGCCATGTTGAAAGTTGGTAATCAAGGATAGGAAGTGTTTCCAAGGGTTGTCAGTGATTAAATCAACCTTACCTTAGCATACATGTATGAGAGAAGTTAGATAAATTATACATAGAGAGATAGCTAGATAGATAATAGATAAATAAGGTAGATGACAGATTAGATACAGATGATAAACAGATATGCTATCAGTCTAGATCTATTACTCACAGTCAGTCGTATCACAGTGTAATTCCATCAACTTCATTTGCAGCAAAAGAACAGCCCCTGATGTACGCCTGTTTCCTGAATATTTGGAAATATTAATATTAATATAGATAGAGTCAGCTTGCCAGTATAAAGAATCTATCTCTCACTATAGGCAGAGCCATGTGTTGGATATTATGGAGGAATATGTATTATTTTAATCGTTTAAAAGACTAATAAACTTCTAATCTACTTTTGGGAGCCTCTGCTCAAGTTCCTGAGGTTCCTACTCTAAAATCCACATCACCCTCCAACTGCTCCCTATGTGAGCCATTAGGGAGCACAATGAATTAGAGAATGAATCCTATTAGCCCACTAAAAAATTATCTTTCAAAGGATGAAGACTGATGCTAAGGAAAAAGAGATGAGGCCTCCCTGGTTCCGCATTATTACTCCTTCCTTTCTTGGGTTACGGATTGAACACTGACCTTTTCTTTCACTCTTCTGCAAGACAACCCCATAAGAAAGCTGAAACCTGCTTTTGTGAAAGCCTATGATTACTATAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214851:ENST00000538094:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains