HsaINT1023341 @ hg38
Intron Retention
Gene
ENSG00000153029 | MR1
Description
major histocompatibility complex, class I-related [Source:HGNC Symbol;Acc:HGNC:4975]
Coordinates
chr1:181052235-181053677:+
Coord C1 exon
chr1:181052235-181052510
Coord A exon
chr1:181052511-181053572
Coord C2 exon
chr1:181053573-181053677
Length
1062 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
TCTCATTTGCTTGCTTTCAGAAT
3' ss Score
9.96
Exon sequences
Seq C1 exon
AGCCCCCACTGGTCAGAGTAAATCGCAAAGAAACTTTTCCAGGGGTTACAGCTCTCTTCTGCAAAGCTCATGGCTTTTACCCCCCAGAAATTTACATGACATGGATGAAAAACGGGGAAGAAATTGTCCAAGAAATTGATTATGGAGACATTCTTCCCAGTGGGGATGGAACCTATCAGGCGTGGGCATCAATTGAGCTTGATCCTCAGAGCAGCAACCTTTACTCCTGTCATGTGGAGCACTGCGGTGTCCACATGGTTCTTCAGGTCCCCCAGG
Seq A exon
GTAAGGACGGGGATCGTGGCTGTCTAGGGAGAGAGCCTGGAGAAAGGGGTGAGCAGGAAACCATGCTCGCTGCCAGGGAGGGGAGGATAGATCACTGCCTCACTCAGTGTGCCTTAGAATGGGTCTTTTAAATAAGTGGTTCTCACACTTTTTGGAACCAGGACGCCTTCATACTATTAAAAAATTATTGAGGACCCCAGAGAGCTTTTGCTGATGTGGGTTATATCTATTGCTATTTACTACATTACAAATTAAAAATTTAAAAATTAAACACGAATGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGCGCATGCCTGTAATCCCAGCTCCTGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCGAGATCGCACCACTACACTCCAGCCTGTGCGAAGGGAGCAAGACTCCCTCTCAAAAAAACAAAAAAACAAAAAACAAAAAAACACAACCCAGGCGCAGTGGCTCACTCCTGTAATGCCAGTACTTTGGGAGGCTGACGCGAGTGAACTGCTTGAGCCCAGGAGTTCAAGACCAGCCTGGGCAACATACTGAGATCTCATCTCTACAAAAAACACAACAATTAGCTGGGCATGATGGCATGCGCCTGTAGTCCCAGCTACTGAGGAGGCTAAGGTGGGAGGATCGCTTGAGCCCAGGAGGTTGAGGCTGCAGTGAGCTATAATGGCACCACTGCACTTCCACCTGGACGACAGAGTGAGACGCTGTCTCAAAAAAAAAAAAAAAATTAAACACAAGAAAACACAAGCAGATATTCCATTAGTGGTCAGATTGATGAGTGAGAAGCAACAGTAAGGAAAATGGTGTTGGGTTTCCTGATGATCACAGGGACAAAAGTCCCAGAAAGTTAACACAGAAGGGAAAGGGGACTTGTGGATTTTTTCTCATTTGCTTGCTTTCAG
Seq C2 exon
AATCAGAAACTATCCCTCTTGTGATGAAAGCTGTCTCTGGGTCCATTGTCCTTGTCATTGTGCTGGCTGGAGTTGGTGTTCTAGTCTGGAGAAGAAGGCCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153029:ENST00000367580:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=88.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCCACTGGTCAGAGTAAA
R:
CAGCCAGCACAATGACAAGGA
Band lengths:
344-1406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains