HsaINT1023827 @ hg38
Intron Retention
Gene
ENSG00000205592 | MUC19
Description
mucin 19, oligomeric [Source:HGNC Symbol;Acc:HGNC:14362]
Coordinates
chr12:40444389-40445644:+
Coord C1 exon
chr12:40444389-40444545
Coord A exon
chr12:40444546-40445518
Coord C2 exon
chr12:40445519-40445644
Length
973 bp
Sequences
Splice sites
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
3' ss Seq
TTAATATAATTCAATTACAGCTG
3' ss Score
6.83
Exon sequences
Seq C1 exon
GTTGACCCCAGTGCTTACCATGATGTGTGCATTGAAGAAGCCTGTGCATGTGACATGGAGGGGAAGTACCTGGGATTCTGCACTGCCGTGGCTATGTACGCAGAGGCGTGTAGTGCAGTTGGAGTCTGTGTCTCATGGAGAAAACCAAATCTGTGTC
Seq A exon
GTAAGTGAAGTCCATATGTTGTTGTTCTTTCAAAACGTAATTAGATAGAAGTGTTTCGTTAGACCCTCAGTCTTCCTCTCATATTTTCTATAAAACACATGTTTGTATACCTACAAACATGTTAATATTTTTGTTTATGATGTGCAAAAATACCTAACTTAAAAAATAAAGCACGTGGCCCAGAGCTTCAAGTTTAATTTTAGTTTAAAAATTTGTATTTTCACAGGGGGAATAATGAATACTGATGGAGAATATTTCTCATTCATACTTAGATGATGAACTGTTTACCTATCTTGGTATATTTACATCTCTTTCAATATTTACCGAATATATTACTTTTGCTTAAAGTGCTCACACATGTTTCCTTGAAAACTTTCATAGAGTCCTATAGAAGATGAACTGAAAATTGAGTATAGACTGAATCTCGATACATATAGAATGTAATAACTTTAATAGAAATGAGTCAGCTCTTTTCCTTCTAAGTATTATGAGAGAAAATATAAGAAGGTTAAAATAGAACCCTCATTTTATTCAGTTTTTTATGCACAGGATTAGATTATATTGACATCTTTAGTTACTTCATTTAGGAACTGTTATTTACATATTAAAGAGCTTAATTGTCTAGGATTTAGTTTTCCAATTTAAAGCTGAAATTGAAACCATGAATCTAGACTATGACCTAAAATATCTCCAAATGATAAAATTAATGTTTACTTTTTTAATCTCAAACTAACCTGACTGTGAGATGGCAAAACAAAGTGCTATTTTGAGTTTATATGCCTTCCCCTCTTGTGATCTATTTTGACTTATATGACAGTTTAGATAAAGCCAAAGGAACTTGATAAGACCTGATATACTTTAGATATGTTTATTATTAATATCATCCCAAATCCCTTGTTAAAATGCTTTGGAAAATGAAAGGTGAAAATTGTCATATAATGAATGAAAGTAATTTAATATAATTCAATTACAG
Seq C2 exon
CTGTCTACTGTGATTACTACAATGCGCCTGGGGAATGCAGATGGCATTATGAACCTTGTGGCACAGTGACTGCAAAAACATGCAAAGATCAGCTCGTTGGCCAGAAATTTTCTTCACTTTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205592:ENST00000454784:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGACCCCAGTGCTTACCAT
R:
AAAAGTGAAGAAAATTTCTGGCCA
Band lengths:
278-1251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains