HsaINT1024130 @ hg38
Intron Retention
Gene
ENSG00000264424 | MYH4
Description
myosin heavy chain 4 [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr17:10463338-10463643:-
Coord C1 exon
chr17:10463551-10463643
Coord A exon
chr17:10463402-10463550
Coord C2 exon
chr17:10463338-10463401
Length
149 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
CCCTCCTTTTCTTTTTTAAGGGT
3' ss Score
11.56
Exon sequences
Seq C1 exon
GGGACCCTTGAAGATCAAATCATCAGTGCTAACCCCCTACTGGAAGCCTTCGGCAATGCCAAGACCGTGAGGAATGACAACTCCTCTCGCTTT
Seq A exon
GTAAGTCTCTTGATCTTCATTTTCTTGAGGATCAGCACTGATTCTTGTGTGCATGTGGTGTCAATATTTTTTCCACCTGTTTGGTCCACAGCTAAAGAAATAGTTTCTGATTTTAATGTGTATAATAATCCCTCCTTTTCTTTTTTAAG
Seq C2 exon
GGTAAATTCATCAGGATCCATTTTGGTGCCACAGGCAAACTGGCTTCTGCAGATATTGAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000264424:ENST00000255381:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCCTTGAAGATCAAATCA
R:
TGTTTCAATATCTGCAGAAGCCAGT
Band lengths:
156-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains