HsaINT1024158 @ hg38
Intron Retention
Gene
ENSG00000133020 | MYH8
Description
myosin heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:7578]
Coordinates
chr17:10415472-10415708:-
Coord C1 exon
chr17:10415681-10415708
Coord A exon
chr17:10415581-10415680
Coord C2 exon
chr17:10415472-10415580
Length
100 bp
Sequences
Splice sites
5' ss Seq
CACGTATGT
5' ss Score
7.26
3' ss Seq
CTCTGATTTCTGTTTGACAGCGG
3' ss Score
7.52
Exon sequences
Seq C1 exon
ATCGAGAGAATCAGTCCATCCTGATCAC
Seq A exon
GTATGTGATTTTTTTTCTTCTCTGATTTGCAAGGATTGTCTTAGATGTTGACAATGCAGGCCATAGTTCTCTGATCTCTTCTCTGATTTCTGTTTGACAG
Seq C2 exon
CGGAGAATCTGGTGCCGGAAAGACTGTGAACACCAAGCGTGTCATCCAATACTTTGCAACAATTGCAGTTACTGGAGAGAAGAAGAAGGATGAATCTGGCAAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133020:ENST00000403437:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.162
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGAGAATCAGTCCATCCTGA
R:
TGCATTTTGCCAGATTCATCCT
Band lengths:
135-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains