HsaINT1024637 @ hg38
Intron Retention
Gene
ENSG00000204475 | NCR3
Description
natural cytotoxicity triggering receptor 3 [Source:HGNC Symbol;Acc:HGNC:19077]
Coordinates
chr6:31588895-31589633:-
Coord C1 exon
chr6:31589526-31589633
Coord A exon
chr6:31589177-31589525
Coord C2 exon
chr6:31588895-31589176
Length
349 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
TGAACTTTCCCTTCCACCAGGTC
3' ss Score
11.22
Exon sequences
Seq C1 exon
AACATCCTCAGCTAGGGGCTGGTACAGTCCTCCTCCTTCGGGCTGGATTCTATGCTGTCAGCTTTCTCTCTGTGGCCGTGGGCAGCACCGTCTATTACCAGGGCAAAT
Seq A exon
GTGAGTAATGGAGCCAGGGGCAATAGTGGACGGGATGGGAGGGGCAGTAAGAGAGTGGGAGGAGGGAGGACAGAGACCAGGAAGAGGAGAGCCTCGGGACTGCAACACTGAGCAGCTCCTGTCCTCTCTCTGACCAGGCCACTGTCACATGGGAACACACTGCCACTCCTCAGATGGGCCCCGAGGAGTGATTCCAGAGCCCAGATGTCCCTAGTCCTCTTCAAAAGACCCCAATAAATCTGCCCCACCACTAACTCCTCATGAGTCTCAAGTGTTTTCTTCTCCATTCTCCAGATGCCAAATCTACTCTCTCCGGATTCCCCCAACTCTGAACTTTCCCTTCCACCAG
Seq C2 exon
GTCTGACCTGGAAAGGTCCAAGAAGGCAGCTGCCGGCTGTGGTCCCAGCGCCCCTCCCACCACCATGTGGGAGCTCAGCACATCTGCTTCCCCCAGTCCCAGGAGGCTGAGCCTGATTGTCCTGAGAAATGGGAAGGATCAGATATGACTCCTCCTTGGCAACTGCCCTTTCCTGCCAGGCCCACACATACCCTCTTCTGGCTGTTAGGGGAGCTTGGGTCCCTGAACACTGTCATTCACCCAATAAATTACTATTTGACCCCAGAGTGGGTGGAAGGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204475:ENST00000340027:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCGGGCTGGATTCTATGC
R:
TCACCCTTCCACCCACTCTG
Band lengths:
356-705
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains