HsaINT1025198 @ hg38
Intron Retention
Gene
ENSG00000107281 | NPDC1
Description
neural proliferation, differentiation and control 1 [Source:HGNC Symbol;Acc:HGNC:7899]
Coordinates
chr9:137042927-137046203:-
Coord C1 exon
chr9:137045878-137046203
Coord A exon
chr9:137043074-137045877
Coord C2 exon
chr9:137042927-137043073
Length
2804 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
GCCTTCTGCTTCCTTCCCAGATG
3' ss Score
11.05
Exon sequences
Seq C1 exon
GCGCGCCTCGCCGGCGCCTCCATCCCGGATCCTTGCTGCAGCGTCAGCGCCGCCGCCCGTGCCTTTCCTCTTCCTCCTCCTCCTCCTTGGCATCCGCCTCTTCTTCCTCCTGCGTCCTCCCCCGCTGCCTCCGCTGCTCCCGACGCGGAGCCCGGAGCCCGCGCCGAGCCCCTGGCCTCGCGGTGCCATGCTGCCCCGGCGGCGGCGCTGAAGGATGGCGACGCCGCTGCCTCCGCCCTCCCCGCGGCACCTGCGGCTGCTGCGGCTGCTGCTCTCCGGCCTCGTCCTCGGCGCCGCCCTGCGTGGAGCCGCCGCCGGCCACCCGG
Seq A exon
GTGAGCGAGCGCGCTGGGCGCAGGCCGCGGGGCGCCCCGGGGCCGGGATCGCCGGGCGGGGACCGGGTTGCCGGGCGCCGCCGCCCTCGTCCTGCCCAGGCCCGCAGGCCCTGCAGGCCTGGTCCGCTGGTGGCGGGGGCCCCGCCTCGCCCACGATGGAATAAACAGGCCTGGCCGGAGGGCGCAGCGCGGAGCCTCCAAAAGGCCGCGCCGGATGGGGCTTCTGCCGGTTCCCAGAGGCGTACCTTACATTCATGGCTTCTTCCGCCGGGAGCGCGTCTGGCTCAGGCCTCCGCGCCGCGGCCATCTGGCTCTGGGCGGGCCCGCCGGGAGTCTGCCTGTGTGCGTCTCTGTGTCTCCGTGTTCGGGGCTCCTGCGGGTGTGGGGCTGGCCCTGAGTGCCCGCCGGCTTCGCTGCCGGTGCGCGTCCCGGGGTCGGGGCCTCAGTGCTGCTCTGCCTGTCCTCACGCCTTGGGTGGCGCTGGGCACCGGCCTTGTGCGCCATGGTGGGCGCTGAAGTTCTGGGGGCACTTATGGCGCAGGCTCGGGGTGCTGTTCTAGCTTCAATAGGAGGGAGACTGTTGCAGCCTCAGAGCCTCCGCCTGCATCCCCTGCCCTCGAGGGCACTGGCATTCTGTCTTTGGGACTGAGGGCTGCAGGTGGACTCCGGAGGAGGGTGATAAGCCCAGGGTCCTGGGACACCCTCTCACCTGCACAGATGGGTCCTGAGGGTCCAGAGAGCAGAGCTCCCTGCAGGAACCCAGGATGCAAAGCTGACGTTTTTCTGGGGGGACTGAACTGGGAGACTTTGCGACTGCATTCGTACAGTACTCCTGGCAGCCCTGCAGAAGAGGTGCTGTGAGCCCGTTTTACAGGCAAGGAATCCGAGGCATGGAGAAGTTAAGTGGATTGTGGCACAGCTGAGGCGCTGTCCTGGGCAGCCTGGTTCTGTGTGTGTGGCCTCAAGGGGCCAGAGTGAGGCCGGCTTCCTCCTGGGCTCAGTGCCCCTGGATGGGAGGTGGGCATGAACAGGAGAGGCTTCCGAGAATCAGAGTGTGCTCAGCCAGGAAAGGCGGAGGCCACCTATTCAGGAAACGGGGCTGCAGCTGCTGTGCTGAGCCCGGGTGGGTGGCAGGTGCCAGTCCTCAGTTCACCGGCCTCTGCAGCTTCGTGTCTGCCTCACCGGGAGACCTGGCAGGGCCCTCCCTAGGCAACTCCTCCCATTCCCAGTGCCCAGTGCTTGGAAGGGAGGGCCCTCAGGCAGCCCAGACGTTGGCGGGTGGAGGGGGGTGTGCCAGCCACCGTCCAGCTGCTCTTGTTCCTGCGACCTCTTTTCAGGAGGAGGAAGTGGGGGATGGAGGCTCCTGGGCTGGGGAAAAGGGCTAGGAGGGGCCTGGAACCCAGACCCTAGAGCCAGCTTTGTACCTCAGGCCCCTGCCTTTGGCGTGGTGGACGGTGGGGTATCAGCACAGGAGCGGGGACTGCCTCACTCCCCAGGTGCCAAGTTGGCGGGTGGGCCCAGGTGGACCTGCTGGCACAGGTTTAATGTTTAACGTGCCCAAGTCCCGGCCCACTGATACTGGAGGCTGCTGCCCCAGGTTGTGGAGGGTGTGCGGTGCCTGGCGTTGGCTCCTGTGCCCACCTGCCACTGCGGCTGCTGGAACTGCCTTGAAGGAAGGCGGACAGCCTGAGGGCCCTGAGTGTCAGGTTACCAAGGAAACCAAACCAGCCAACCAAGGTCTGGAGAAGGATGATGCCCCGTGTGGCCCCCGTGGCCCTGCCTGCAGTGTGCAGTGTGGGGCTGGGCAGAGAGGAAGAGTCCTGGTTAGCCAGAGGTGCCACCGCAGACTCCCCAGGCAGGGTTGATGGCCCTGCTGGGGTTCCCCTGGCTCCACTGGCTTGCTGTGACTGGGGACATTCCTTAGCTTTGAGGCAACTCAGCTATATCCCAGAGGGGAAACTGAGGCAGAGGGCCATTGCCCCCTCGCCCCGTTCTCCAGCACCAGGATAAGACTGATTAGCCACATGTGTCAGCTGGCACCGTGGCCTGGGCCCCTCATCAGCGAGATGAAAGTGTGGTTAGGAACTAGGGAACTAGGGCCTGGCCTGCCATCCCCAGCACTGCCAACCTCGGCCTCCTGAGGCCCTCGGGTGCCACCTGGCCCCTGACTGCAGCCCCTGGTGTGGTGGCTTTGGGAGTGACCTGCCTGGGTTCTGTGTCTGAGGCCAGTGAGGTCAGCAGACTCCATCTTAGGTGTCCTCGGTGCCTGGGGGACAAGCCAGAGGCTGGAGGAGCAGCATCCCTTCCAGGCTGCACACTTGTCAGTGCCGGGTTCTGGGGAGAGCCGCACGGGAAGGAGAGGTCGCTGGCGGCATCGTTTGCTGCTCCCCAGAGACAGACCTGGGCCCTTCCCTCTGGGACTCCCAATCTGGACGGGGTTCCTGGCTTGCTGTGGGGCATGTTGAGGCCGGAGGCTGGGCTTGTGGGGCTGCACGGCCCTGCCCAGGAGAACTCAGCACTGCCTGGACGGCGAGACTCAGCTTCTGAGCTGAGGGCTCTATCAGGCCTGGAAGTGGACCCTGGGGAGGGGTGGGGCAGGGTAGTTCTGATAAGTCCTAGGACTGTTCGCTTCCGGGTTCTGAGCCCTGGCGTCAGGGAGGAAGGGCATGTCCAGAACAATGGCCAGAACCAGGCCCGGCCAGCTCGGGGGGTGACGGGGGCGGGTGGCTGGGGCAGCGCTGCCGTGTGCAGGGGCCGAGCCCTGCGGGGCCGTGAGCCGGCCCTGCCTTCTGCTTCCTTCCCAG
Seq C2 exon
ATGTAGCCGCCTGTCCCGGGAGCCTGGACTGTGCCCTGAAGAGGCGGGCAAGGTGTCCTCCTGGTGCACATGCCTGTGGGCCCTGCCTTCAGCCCTTCCAGGAGGACCAGCAAGGGCTCTGTGTGCCCAGGATGCGCCGGCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107281:ENST00000371601:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=NA C2=0.432
Domain overlap (PFAM):
C1:
PF068096=NPDC1=PU(11.4=97.4)
A:
NA
C2:
PF068096=NPDC1=PU(22.9=43.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains