HsaINT1025298 @ hg38
Intron Retention
Gene
ENSG00000119508 | NR4A3
Description
nuclear receptor subfamily 4 group A member 3 [Source:HGNC Symbol;Acc:HGNC:7982]
Coordinates
chr9:99821855-99825832:+
Coord C1 exon
chr9:99821855-99822407
Coord A exon
chr9:99822408-99825658
Coord C2 exon
chr9:99825659-99825832
Length
3251 bp
Sequences
Splice sites
5' ss Seq
CAAGTACGT
5' ss Score
8.4
3' ss Seq
CTCTTTCACCTTGCCTGTAGAGC
3' ss Score
8.32
Exon sequences
Seq C1 exon
ATAAATGACGTGCCGAGAGAGCGAGCGAACGCGCAGCCGGGAGAGCGGAGTCTCCTGCCTCCCGCCCCCCACCCCTCCAGCTCCTGCTCCTCCTCCGCTCCCCATACACAGACGCGCTCACACCCGCTCCCTCACTCGCACACACAGACACAAGCGCGCACACAGGCTCCGCACACACACTTCGCTCTCCCGCGCGCTCACACCCCTCTTGCCCTGAGCCCTTGCCGGTGCAGCGCGGCGCCGCAGCTGGACGCCCCTCCCGGGCTCACTTTGCAACGCTGACGGTGCCGGCAGTGGCCGTGGAGGTGGGAACAGCGGCGGCATCCTCCCCCCTGGTCACAGCCCAAGCCAGGACGCCCGCGGAACCTCTCGGCTGTGCTCTCCCATGAGTCGGGATCGCAGCATCCCCCACCAGCCGCTCACCGCCTCCGGGAGCCGCTGGGCTTGTACACCGCAGCCCTTCCGGGACAGCAGCTGTGACTCCCCCCCAGTGCAGATTTCGGGACAGCTCTCTAGAAACTCGCTCTAAAGACGGAACCGCCACAGCACTCAA
Seq A exon
GTACGTATGAGATTCGCCCAGTTAATAAGGGGACTTGCTAAAAAAGTTGGCTTGCTGGGAAGCGTCGCTCCTGAAATTGACAACTTTGAGTGTGGGGTTCCCTCCCCTGACCTTGCCGCCCGGCTCCGGCTTTGCTAGCCCAGCGGCCCGTAGGTTCTGATCTGAAACTTTTCCCCTGTAGTGGGCCCGCGGGGATCTCTGGAGCTCGTGGGATTCCTCCCCCCACTCGAAGAGGCGAAAAGCCTCTAACAAAGAGGAGGACCGGGATTTGTGCTATAGCGGCTCCAGCGATGTAATTCAGGGTATTTCGGCTCTAGTTGTCATGGTAATGATGCTCTCGGCGGCGGCGGCGGCGGCGGCAGCGGCAGCGGCAGGGAGTTGCAGCTCCGGTGATGAACGGCAGTAATTTTCCTGCCTTTTAAGTAGGATTGAAAATAGGAGCTCTGGTGGGTCCAAGTAAATGTTGCTAATGGTGGCACCGAGCTGGTTCTCTGGAAGGAAGCTTAGGAGGGAAGGGCCTAGGCAGCGACGGCCAGAGTTTGCAGACGCACTCGGAGGACCTCAGGAAAGAGGGCGTAATTGTAGGAATGTGGCTTATTGTATTGAAATGAGCCTGGGGTTCCACTAGGCACGTCTGCCTGTCGTCGCTGACATGCCGGTTTACACTTTTCCCTTAGGAGGTAAATCGGGTGTAATTGGCGACTCCCGCACACTGACACGTGTGGGGACGGTGTCCCTCTCCTCTGGACGTTGGCTCGGTGTGGGAAAGGCATGCTTTTTCACGGACAGAACTCGCGCTTTTGGAGAAGTTGCTCCGAGTGTTTTACTCTTAGTAGAAATGAAAGTTCTCGGTGGTGAGACGAGAGCGGTCATGCGAGCGCAGCCTGCGGAGACTGACTTCCAAAGGCACCTCTCCAACCTGTTGGAAGCCTCGGGGCAGTGGTGAGGAAGAACGCATTTGTCCCTTGATTTCCAAAAACGTTCTTGGAGATTGCCTTTTATTTATTTATGCGTCCGGATTCTCCAGAGGGAAGAGCTGCGAGGAGTTAGTAATCAGAAATGTCGGGCTGTGATCCCAGGGCCTTGTGGTGCTGGGAGAGAAGAACAGGGAGCCGTCATTCCATCGCGAGTCCAGTGCCGGATCTCCTTTTCCCACGACCGGGAAATATTTTATAGAATCAAGTTAGGGAAAGAAAAAGCTGCCTAACGTGGCTGATGGGCACAATGAATGAAGTTACTTTATTCGAGTTATTTTCGCTGAACAAGATGCTCGCAGAGTTAGTATCAAAGCCTCCTTAGGCCACAGCAACCTCCACGTCCGCTCCGCCCCCCACCCCCCGGCACCCATCCACCCCTTTGCCTGGGACCGTGCGCTCACAGAAATTCTTCCCCGCGGTTTGTCTAGTCTCCCTCGGTCTTTCTGAGAATCTCAGTCTTTCCCTTTCTGTCAGTCTCTCCCTCGCTCCTCTTGCCCCCGCCCAACCTCCGCCCCCGCTCCCCAGGGTTGGAAACTCCGCAGAGGAGCCCCGGTCACAATGGTGCGTTTCACGGTTTCCTCCACACACTTCACCACCGGGAGGGGAACACGGGGGTGTTCCTTTCGTCTGCCCACGAGAAAGAAAGGGGCTTTGACAGAGGTAGTTATTTCTTCCTAATTTACAACCCCAAGGCTCTGTGCTCCCGGCCCCGGCGGCCGCAAGCAGGAGCGGCGGAACGTGTTTCCAGGCACTGAGGCTTTGCCTAGGTAACCGGCCGCTTGTGGGGTGGAGAGAGCGGCGGGGCGCTGGGCTGGGCTGGAGGAAAGGCTGTGTGGGTCCCTCCCGCGAACGCTGGGCGCTCGAGGGGAACTCCTTCGTTGGGGAGAGGCGGTCCCCGCCCACCCGAGTTCTGAGGCCTCCTCTCAGAGAACGACTCCGCTTGAAAGGCCCTCAGGGAATGCGGGACGGGAATGCGGGCACCCACTGAAGGGGCGGGTGGGGGATTGCTGGAGACCCCCATTGAAGATGCGGGGAGACGGGAAGCACGTGCTACAGCCGTGGGAAGATCCGCTTCTACCCGCGCTACATCGAGCGCAAGCTTTCCGTCCGAGCAGCTCCAGCTGGGGCTGGGGGTGGCAAGGGAATCCCCCATTTCCTGGTCGTCGAGGGTTTCCTGGACCTGGGAGCCCCGAGTCCCTTTCTCTCTTCCTGCAGGCAAGCCCCGGGCTCAGGGGCGCCAGGAGATGACCCTCGTGGCCCCGCGCACCTCGGAGGTTTTTGGTTTGGTTTGATTTGGGGTTTTTCGGTCCCTGTTCCCACTCTTCGAGCTGCGCCCACCCCGGGCAAAGGGGGCGCTATAGGCCGGAGTTTGGGCACCCAGTTCCTTCCCTGAGGCCTGCTGAGCTGCGCTTTCAGCTACAAAGTTTCGCTGAGGCTGTGGGCTGAGACGCTGGTCCCGGAGCTGCGCTCGGCGCCCTCAGGAATGTGCCCCCGCTAGGCCGCTGGGTGGCCAGGAGCCTCCAAGCCGCCCACCCTCGAAGACACCGCCCTCTGGGTGCAGGGGACCTGCCTCCGCTCGTCCCATCAGCCGCTAACGCCGTCCGCTTCGTCCCCTTGCTTCCAGCGCCAGCCTTCTCATCGCTGTGCCCTTTTGTTTGCTTGACCCCTGGCCCTCGAAACTCGCGGCTAATAGAAGCGAAGCTCCATTAGCATTTAGAATGAAAAGCGCAGACTTTCTTAATTCCTCGGGGCATTCATGCATTCGTTCCGGACCTTGTGCATTTCCTATGCAACGTGTAAAATTTGTATTTGAGGGGTGGGGGCGGGCGGAGCTGGAAAATGGCTTTTTTCCGCTGGTGAACACTCACTGACCCCCCGTATTCGGGCGGAGCTCGTTCCTCAAGTGTTCTGCTTTCTTTGGTTTTCCTGACTTCGTAAGCTCGGAATCAATTGTGGGGGCAGAGAGATCAATTTCTGGGCAATAACAGGCTGCGCGTTTTTTTTTTAGCCTCGGTTTTGGTGCCACAAAACGGTGGTAGGCGCAGTGGGTTCCAACAACCTTTCCTCGGCTTCCCCGAGGCCGTGTGATGCTTCTTGCCCAGGGGGACTCCTGTACCATTAATCACCCTTAATTTTACGATAATTCTTTGTAATTAATGTAACATTTCTAGAGGTTGCCAACCAATTCCCCCAGTCCCCAATGCGCCCAGCCCGGGCCGTAGTGACCCATCCTGGTCTCACTGTGACCTATGTCCTCTTTCACCTTGCCTGTAG
Seq C2 exon
AGCCCACTGCGGAAGAGGGCAGCCCGGCAAGCCCGGGCCCTGAGCCTGGACCCTTAGCGGTGCCGGGCAGCACTGCCGGCGCTTCGCCTCGCCGGACGTCCGCTCCTCCTACACTCTCAGCCTCCGCTGGAGAGACCCCCAGCCCCACCATTCAGCGCGCAAGATACCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119508:ENST00000395097:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains