HsaINT1025902 @ hg38
Intron Retention
Gene
ENSG00000187950 | OVCH1
Description
ovochymase 1 [Source:HGNC Symbol;Acc:HGNC:23080]
Coordinates
chr12:29471802-29473103:-
Coord C1 exon
chr12:29473029-29473103
Coord A exon
chr12:29471983-29473028
Coord C2 exon
chr12:29471802-29471982
Length
1046 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TGGTTTCATCTTTACTGTAGATG
3' ss Score
7.84
Exon sequences
Seq C1 exon
AGTCTTTAAACAAATTTGAACCAAAGTTACCTCCCCAAAACAATCCTGTATCTACCGTAAAAGCTATTCTGCATG
Seq A exon
GTGAGTTGGTGACATGTTATTACTATCTGTTTAATCTTGTTTCTTCATTAACTAGATGTCTCTTTTGGAAGCCCTTATCTTACATTGGCTATAACTCCACAGTGAAGAAGAATGAGTCTTATATTTAGGTCCATAAAACGTCCAGAGTCATATTTGGATTTATAGTTAGACTCATAAATAGAGGGAAGAACAAATGAGCTTTAGGTTAGGAAGAAAAGGGTATAAAGCAATGTTTTGTCCTCATTCATTCCTCTACAAACTTAATATTTAAAATGACTTCTATAGTCAGTGTGGGGCAAAGAGAGAAAACAAAGGTTTTTTATTTTAAATTCACACTGGCATCTTTTAATTTCCTTATGCTCTAAGGCATCTGGGTAAATACTATGATCCCTCATTGTTCCACATACATGTATTGAATATGTTCAAGTTGATGGACTGGAATAGAAAGTTGCACAAGGAGCTATTAGAGAAGAAAATATCTGCCTGTTGCTGGAGGGTTGGAGAAGGCTTCCTAGAGATTAGTGCTTGGGCTATGGGTCTCATCAATTCCTGATAAGAGAACAGCATTTAGATGCCTGAGCAAATTTGATATGTTTGAGGATTGATACATGGATTCATACAGTGAGAACAAGAACTAAAACAAGAAGATATAATGAAGAACCTTATGTACTCTGCTAACAAACTTGAAATTTTCCTACTAGAATGTAAGTTCCATGGGGGCCAGTATTTTTATCATCTATTCTATTCCACCAATAATATATCACCAATGTCTGGAACAGTGCCTAGCAAATGGCAAGCACTAAATAAATATTTGCTAAATGAATAAATAAAATTCTGTAGGCCAGTCCCTAAAATTCTGGTTGCCTAGCATAGTCTGGGAAGGCTTCTTAAAATCAGATTTTTCAGAGGTGAGTTTTGGGAGTCAATATTATTATAAAGCCTATCTGATGTTTGAGAATCACTACTGTTAACTATGGCAAGCTATTGGAGGAGTATGTTCTAAATTACTGCAACCTTATGGGTCATTGGTTTCATCTTTACTGTAG
Seq C2 exon
ATGTCTGTGGCATCCCTCCATTTAGTCCCCAGTGGCTTTCCAGAAGAATCGCAGGAGGGGAAGAAGCCTGCCCCCACTGTTGGCCATGGCAGGTGGGTCTGAGGTTTCTAGGCGATTACCAATGTGGAGGTGCCATCATCAACCCAGTGTGGATTCTGACCGCAGCCCACTGTGTGCAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187950:ENST00000318184:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(18.9=72.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAATTTGAACCAAAGTTACCTCCC
R:
CAGTGGGCTGCGGTCAGAAT
Band lengths:
238-1284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains