HsaINT1025933 @ hg38
Intron Retention
Gene
ENSG00000177359 | OVOS2
Description
NA
Coordinates
chr12:31147881-31148973:-
Coord C1 exon
chr12:31148815-31148973
Coord A exon
chr12:31148123-31148814
Coord C2 exon
chr12:31147881-31148122
Length
692 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
ACTTTCTTTTGTCATCTCAGGCC
3' ss Score
8.16
Exon sequences
Seq C1 exon
CTTAAATTTTCGGATCCCAATAATGTACCTATGGTGAACAAGTTGTTGCAACTGGAGCTCAATGATGAATTTATAGGAAATTATACTACGGACGAGAATGGCGAAGCTCAATTTTCCATTGACACTTCAGACATATTTGATCCAGAGTTCAACCTAAAA
Seq A exon
GTAAGACATCAAAGAACAGAAGAAGACCATTAGACATCCCACAGAGGATTTGGATATCAGAAATGTTAAACATTAGGAATATCTCAAAAGATAGCTTGTATACAGAATCTATTTTAAAGAAAATTTAAAATGTAACTTATTTTATAAATTTGCTTGTTCACTAAATAATACATGAGAATACTTGTTCAAGGGGATGGGAAGCTAAAAGTCTATCACGATTGTTATAAATTTGCTAACAACTAATATTTTCCTCTAGGAAACAAGAAGTAGCTCATGAGGATGATTTGACTTTCTTCCTCAGATCATTTCATGCATAGATAGGGGAGATCCTATACTTTCTGTTTATTTTCCGCTGCTTAAACAGAATTTTGCAGTTAAATAATTTGTCAGTGTTCACATGTAGCTGAAAGAAACAGAACTGAAACCCAATTCTGTGGCTTCAATTAAAGTGTAAAAAACATAACAATTCACCATCAGTCTAATGAAATATTTACACAATCTTTCATGGTCACGTTTTGTATACAAAGAGCAGAGTGCTATTATTATTTTGATTCCAATAACTTAACATTAAAACGTCAGCCACAAGCTGAGATTCCTCCCTACTCTGGAGAGTTGAGAAGCCTCCATTCTCAGTAACAACTGTCTTCGGATGTCATGATACTAAGACCCTTCACTTTCTTTTGTCATCTCAG
Seq C2 exon
GCCACATATGTTCGACCTAAGAGCTGCTATCTTCCCAGCTGGTTGACGCCTCAGTACTTGGATGCTCACTTCTTAGTCTCACGCTTTTACTCCCGAACGAACAGCTTCCTGAAGATTGTTCCAGAACCAAAGCAGCTTGAATGTAATCACCAGAAGGTTGTTACTGTGCATTACTCCCTAAACAGTGAAGCATATGAGGATGATTCCAATGTAAAGTTCTTCTATTTGGTAAGTCTCAGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177359:ENST00000398963:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF077039=A2M_N_2=PU(29.3=54.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTATGGTGAACAAGTTGTTGCA
R:
TTGGAATCATCCTCATATGCTTCACT
Band lengths:
342-1034
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains