HsaINT1025942 @ hg38
Intron Retention
Gene
ENSG00000177359 | OVOS2
Description
NA
Coordinates
chr12:31129719-31130589:-
Coord C1 exon
chr12:31130508-31130589
Coord A exon
chr12:31129876-31130507
Coord C2 exon
chr12:31129719-31129875
Length
632 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TTTGGTGATTTGTATTACAGGCT
3' ss Score
6.71
Exon sequences
Seq C1 exon
GTTATCAAAGGCAATTATCTTTCAAAAACTCTGATGGTTCCTATAGTGTGTTTTGGCAGCAGAATCAGAAAGGAAGCATATG
Seq A exon
GTGAGACATAAAAATTTTATTTTATATAATATAGGAATTACCTGAGGAGGGCTTGCAAGGAGGTGAAGGAGGATAGAGTTCAGTGGGGATTTAGAAGCAAAGTGGGTTTCAAAGTCAATTTACAGAAGAGAAATAGATAAAACTAAAGATTTAGTGATTCCAATTCTAATGCAACAATGTTCCTTCAGTCTCATGACGATTTGCTTAGCAGTCTGATCCTTTCATGACAGCCCCTAGACATGCACCGCTGGTTAACTCCACCGAAGAGGGCACGGCACGTCTTACTCTGTGCTTCTCAGAGTCCCATATAGATTCGGGAAAGTGAAATTAGAAGGACCCAAAATACCTAATTACATCATTTCTCTCTCCATGTGCAGATAATCTAATGGGCTATATACAACAGGACCTTTGGGTGCAAACATGCTGAAAATTACCTACTCTAATTTCCACTTATTGCTAGTCATAATATTTTCCTGACCCAAAGGAAAGGGCCACTAACAATAAAGATGGTTTACAGTAGATGAGTTGAATGCATCCTTTACTCAAAGGGAACAATGGTGATGAAACTGTGGAATTGCTGACATTGTCACTTCCTCTTTATCTAACTTTTGCTTTGGTGATTTGTATTACAG
Seq C2 exon
GCTCAGTGCTCTTACTTTTAAGACATTGGAGAGAATGAAAAAATTTGTATTCATTGATGAAAATGTTCAAAAACAGACCTTAATCTGGCTTTCAAGCCAACAGAAAACAAGCGGCTGCTTTAAGAATGATGGCCAGCTTTTCAACCACGCCTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177359:ENST00000398963:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(11.1=100)
A:
NA
C2:
PF076789=A2M_comp=FE(21.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAATTATCTTTCAAAAACTCTGA
R:
CTCCCAGGCGTGGTTGAAAAG
Band lengths:
231-863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains