HsaINT1026002 @ hg38
Intron Retention
Gene
ENSG00000178467 | P4HTM
Description
prolyl 4-hydroxylase, transmembrane [Source:HGNC Symbol;Acc:HGNC:28858]
Coordinates
chr3:49004861-49005867:+
Coord C1 exon
chr3:49004861-49005046
Coord A exon
chr3:49005047-49005776
Coord C2 exon
chr3:49005777-49005867
Length
730 bp
Sequences
Splice sites
5' ss Seq
CCGGCAAGT
5' ss Score
3.16
3' ss Seq
GTGCCCCCCCTGCCTTACAGCTA
3' ss Score
9.49
Exon sequences
Seq C1 exon
GGTGCTGCGCCTCACTCGCCTGTCGCCTGAGATCGTGGAGCTCAGCGAGCCGCTGCAGGTTGTTCGATATGGTGAGGGGGGCCACTACCATGCCCACGTGGACAGTGGGCCTGTGTACCCAGAGACCATCTGCTCCCATACCAAGCTGGTAGCCAACGAGTCTGTACCCTTCGAGACCTCCTGCCG
Seq A exon
GCAAGTATCTCCCAACTGGGGGCTGCCTTCAATCCTCAGACCAGGAACACCCATGACACAGGCACAGCCCTGCACTGTGGGCGTGCCCCTTGGCATGGGGCCAGGAGATCACTGGGTTATCCCGGTTAGTGATGCCCTCACCTCTCCCCACAAGTTGTTTACCCAATGGCTGGAAAGGGGTGGCTACTGGTCATCGTGACCACTGGAGTCAACACAGACTGATGTACCCACAGACACCAAAACTTGCCCCCTGAGTTCTGAAGCAAGGGGCAAGGCTGGGCCCCTAGCTTGTCCTGCCCATTCCTCCAGGTGTTGATCTTGATTCCACTTAGAGAAGCTGAAGCTGTGCCTCCCTCCCCTGTCAAGCCAGTTCTTTCCTCTTCAGGTGGCTGTTCTGGCCCAGCCCCTTCCCATCCCCAAGGAGCCCTTCAGCGCGCCCTGTTGCTTCTGCTAGCCTACCTTTCCCTGCCAGGCCCTTGCTCAGGGCCATGGCATTTAACTAAGTGCACCTGTGATCTTGGCCAAAAAACCATTGCAACTCACAGTAAGAGACTGGGTTTCGGGGAAGGAGGGGCTAGGGACATTTTGGCACTGGCCTGCCCTATTGTCTCCCATCCTAGTCTGTCCTGGTCCCTGGCAACAGGAACCTGGGCAGCTTATCCTGCCCACAGGTAAGCCCCTGGGAGCATCCACAACTGGGGACCTGCTCAGTGCCCCCCCTGCCTTACAG
Seq C2 exon
CTACATGACAGTGCTGTTTTATTTGAACAACGTCACTGGTGGGGGCGAGACTGTTTTCCCTGTAGCAGATAACAGAACCTACGATGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178467:ENST00000383729:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.007
Domain overlap (PFAM):
C1:
PF136401=2OG-FeII_Oxy_3=PU(30.1=69.8)
A:
NA
C2:
PF136401=2OG-FeII_Oxy_3=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACTCGCCTGTCGCCT
R:
TCATCGTAGGTTCTGTTATCTGCT
Band lengths:
263-993
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains