HsaINT1026214 @ hg38
Intron Retention
Gene
ENSG00000106331 | PAX4
Description
paired box 4 [Source:HGNC Symbol;Acc:HGNC:8618]
Coordinates
chr7:127613022-127613532:-
Coord C1 exon
chr7:127613450-127613532
Coord A exon
chr7:127613092-127613449
Coord C2 exon
chr7:127613022-127613091
Length
358 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TTGTCCCTGTCCTCGCTCAGGTC
3' ss Score
9.18
Exon sequences
Seq C1 exon
AGTTCCAGCGTGGGCAGTATCCTGATTCAGTGGCCCGTGGAAAGCTGGCTACTGCCACCTCTCTGCCTGAGGACACGGTGAGG
Seq A exon
GTGAGTGAGCTCTGCAACACTGTACAAACCACAAGGAGGAAGAGTCTGGGCCGGCCAGGGCTTTGGGTTCCAATGAGGTGGAGAGGGGAGGTGAGAAATTGGAAGCAAATTTGTTTGGAGCAACAATCAGAGATGAGATCCTCCTTGTTCACCTTCTGCTGACTGCTCTCCTCTCTTCCCCAACCCAAACCTTTGAGTTGAGGAAGGGGCCAGAGAGCAAAAGCTAGAGCAGGGAGGGAGGATGTCAGGCCCAAGGAAGGGTCAACATTCTGAGTTCAGGCTAGGAACATGTGGTGAGATCAGCAGGTGACAGGCAGCATAAAGTACAGCCAGCTGCATTGTCCCTGTCCTCGCTCAG
Seq C2 exon
GTCTGGTTTTCCAACAGAAGAGCCAAATGGCGTCGGCAAGAGAAGCTCAAGTGGGAAATGCAGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106331:ENST00000341640:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.613 A=NA C2=0.701
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=FE(47.4=100)
A:
NA
C2:
PF0004624=Homeobox=PD(19.3=45.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains