HsaINT1026215 @ hg38
Intron Retention
Gene
ENSG00000106331 | PAX4
Description
paired box 4 [Source:HGNC Symbol;Acc:HGNC:8618]
Coordinates
chr7:127611945-127613091:-
Coord C1 exon
chr7:127613022-127613091
Coord A exon
chr7:127612001-127613021
Coord C2 exon
chr7:127611945-127612000
Length
1021 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATT
5' ss Score
5.95
3' ss Seq
GATTCACTCTCATTTTATAGGTG
3' ss Score
10.09
Exon sequences
Seq C1 exon
GTCTGGTTTTCCAACAGAAGAGCCAAATGGCGTCGGCAAGAGAAGCTCAAGTGGGAAATGCAGCTGCCAG
Seq A exon
GTGATTTCTCTGCACCATCATCCATCTGCCCGCTCAGTCATCTATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCTCCATTCGTCCATCCATTTATCCATCCACCCATGTATCCATCCATCCATTCATCCATTCATCTATCCATCCATCCATTCATCCATTCATCATCCACCCACCACACCCACCCATCCACCCAGCTACCCATTTATCCACCCATCTATCCATGCATCAATCCATCCATCCTCCATTCATCCATCCATTTATCCATCCACCCATGTATCCATCCATCCATTCATCCATTCATCTATCCATCCATCCATTCATCCAGGCATCATCCACCCACCACACCCACCCATCCACCCAGCTACCCATTTATCCACCCATCTATCCATGCATCCATCTCTCCATCCATCCATTTATCCATCCACCCATCTATCCATCCATCCAGCCAGCCAGTCACCCACCCATCTGCTCACCCACCTATCTACCTATCCATTTATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCACCCATTCATTCATGCATCCATCCATGCATCTGCTCATGCATTCATCCATCCATCCACCCATGCATCCGCCCATGCATCCATCCAGCCACCCATGCACCCATGCATCCATCCATCCATCCATCTTTCCATTAATCTGTGCATCCATCCACCCATCCATCCAATATTTACTCAGCATCTCCCCAGTGCCAGACCCTGTGCTAGATGCTGGGCACACACAGTCCCGGATCTTAAGGCTGCACTGTCCCCAGTACCATCACTGGAATTTAATCATTCTTCTCCAGTTTCCCAAGGACCTGTCTTGGGGAAGAGGACAGTTTTGGGTTAAAATATCCATCTCTTCACACCCCTGCAAGAAGTGGCTGACTTTCCTAGAACCTCTTTGTATCCAACCTTCCTGCCTCTCACCACACTCCTCCCGTCCCTAACCCCAATTCCTCCTTCTGAGTGGATTCACTCTCATTTTATAG
Seq C2 exon
GTGCTTCCCAGGGGCTGACTGTACCAAGGGTTGCCCCAGGAATCATCTCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106331:ENST00000341640:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.701 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(19.3=45.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains