HsaINT1026479 @ hg38
Intron Retention
Gene
ENSG00000132915 | PDE6A
Description
phosphodiesterase 6A [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr5:149884479-149884867:-
Coord C1 exon
chr5:149884780-149884867
Coord A exon
chr5:149884580-149884779
Coord C2 exon
chr5:149884479-149884579
Length
200 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
GCTTCTCTTTTTTTCTTTAGAGC
3' ss Score
9.71
Exon sequences
Seq C1 exon
ATCCCAGAACCCACTGGCCAAGCTCCATGGGTCCTCTATCTTGGAAAGACACCACTTGGAGTTTGGCAAAACACTGCTCAGAGACGAG
Seq A exon
GTAGGATGAGGGCCAAGGGTCTACAGGCCGCGGGGCCTGGATCAGAGGCTCTATTTCACAAGGAGCCTGAGTGTGCCCAGGGAGCATTCTTCCCATTGGCCTGGGCTGCCTCTGCCATCATCTGGGGTGGCCATTGGTAGGTGGGTGACTTTACTGCCAGCATCAATTCTCTCCCATCTCGCTTCTCTTTTTTTCTTTAG
Seq C2 exon
AGCCTGAATATCTTTCAAAACCTCAATCGTCGACAGCATGAGCATGCCATCCACATGATGGACATTGCAATCATTGCCACAGACCTCGCCCTGTATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132915:ENST00000255266:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(11.6=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(13.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCCACTGGCCAAGCTC
R:
AAATACAGGGCGAGGTCTGTG
Band lengths:
180-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains