HsaINT1026482 @ hg38
Intron Retention
Gene
ENSG00000132915 | PDE6A
Description
phosphodiesterase 6A [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr5:149867725-149868158:-
Coord C1 exon
chr5:149868095-149868158
Coord A exon
chr5:149867800-149868094
Coord C2 exon
chr5:149867725-149867799
Length
295 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TGAGGGTCTGTCTGTTGCAGGTA
3' ss Score
10.06
Exon sequences
Seq C1 exon
GGCCATGATGATGACCGCCTGTGATCTCTCAGCCATCACCAAACCCTGGGAGGTGCAGAGCCAG
Seq A exon
GTATGAACTCCTGCTGACCCAAGAGGAGGGGCATCCCAGTACTGGGGGCATCAGGTCATGAGGCTTGGACTCTCTCAGCCCAGCTCCAGAACCAGCTCACCTGTGTCCCATCCTCCTCTACCAAGACATGGGAATCATTTTACGTCTCTCCAGTGATGACAGCAAAAGTGAGGGTGGCAGGGCAGGGATGGGTTTATCCTTTTTGTTGATTTGGAATTGCAAGTGGGGTGGGAGCAGGGGTAGGGGATTGGGCTGGGGCTCTGACTCTGCGTGTGTGAGGGTCTGTCTGTTGCAG
Seq C2 exon
GTAGCTCTGCTGGTGGCTGCTGAATTCTGGGAACAAGGTGACCTGGAGCGCACGGTGCTGCAACAGAATCCCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132915:ENST00000255266:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.140
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(11.6=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGATGATGACCGCCTGTG
R:
ATGGGATTCTGTTGCAGCACC
Band lengths:
136-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains