HsaINT1026484 @ hg38
Intron Retention
Gene
ENSG00000132915 | PDE6A
Description
phosphodiesterase 6A [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr5:149863119-149866253:-
Coord C1 exon
chr5:149866170-149866253
Coord A exon
chr5:149863267-149866169
Coord C2 exon
chr5:149863119-149863266
Length
2903 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
GCACATACTCTCTCTTCTAGGAA
3' ss Score
10.02
Exon sequences
Seq C1 exon
CCCATGATGGACAGAAACAAAGCAGATGAACTCCCTAAGCTTCAAGTCGGCTTCATTGACTTTGTTTGCACCTTCGTCTACAAG
Seq A exon
GTAGGCCCTTGGCTTCCTCAGCCGCAACAAGATGTCTTTGATAAACCTGGGATTTCCAGACAACAGCAGGAATAATAAACCCTAGCAGGTGACCAGTGGGTGATACTTTACAAAGCGCTTCTCATCTCTAATGGCATTCGATTCTCAGGACAGCTCTATGGGTCTCATGTGATTGCAGCTCCAGGCTCCAGCGTACGGTACATCCTAGTTGCTTAATACATAATTGTGGGGCAAATGACTAAGCATGGATTCACAGAGGAAGGGGAAACATAGTAGACATATGTCCTTCTAAGTTCCCTAGCTGGTGGAAACATCATAGGCCAAAAGTAATTGTGAAAAGATAATCTGGACTTTCTCTTTGAGCTCTTATTCAAAGTTGGTCTCCCTCTTGAGAAACCCATTGCTCCCAACTTTCTGTTAATCTGTGCCACCATCCACCTCTGACTTTTAATTTTTATTTTGGCCATGTTACACATGAGAAGACAAAAGTCAGAGATGCAAAGTGACAGGGCCAGTGTCACTGGACTTAGCCATAAGGCAGGATTTAGCCCAGTTCTCTTTATGCTGTGTGAGCTGCAGCCCTTTGCTAGGAAGAAGTGCAAATTTTCTAGAAGGCAACAAGAGCATCTGAGATACAACTCAGACTAACTGGGGTGCTCTGACCCACGGGACACAGTGGCTGATGCTTGCCACTATCATCAGTAATATTTCTTTTTTTTCATTGAGGACATGAGTTTTTTGCTGGTTTTTTTTTTTTCTTTGAGACAGGTCTCATTCTGTCACCCAGGCTGGAGTACAGAGGCACCATCATAGCTTACAGCAGCCTTGACCTCCCAGGCCCAAATGATCCTCCCACCTCAGCCTTCTGAGTAGCTGGGACCACAGGTGCACACCACCACATCCAGCTAAATTTTTTTTTTTTTTTTTTTTGAGACAGAATCTCACTCTGTCACCCAGGTTGGAGTGCAGTGGTGCGATCTCAGCTCACTGCAACCTCTACCTCCCAGGTTCAAGAAATTCTCCTGCCTCAGTCTCCCAAGCAGCTGGGACTTCAGGCATGTGCCACCACACCGGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTTGCCTTGTTGGCCAGGATGGTCTCAAACTCCTGGCCTCAAACGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCATGGTGCCCAGCTGAGGGAATGAGTTTTAATCATCAGGAATATTATTAAATAAGGGAGACTGGGCTAAGTGCTTTATATATGTTATCAAAACCACACTGTGGGGTAGGTATTATTACTGTCCTGATTTAATGGCTGAAGGTAAGCTCTGGTAGTGACCCGCCCAAGATCGCAGTTTGTGGCAGAGCCTGGACCGGAACCCAGGCATCTCTGAACACAGTCGGCTCTGGCACTTCACAGCGGGCCGTGGATTTGCTGTTCTTATATTGGGCAAATCCACTCCATCAATCTGCATCTCAATTTCCTTACCTAAAGATGTAGAAGTGATGAATCTTATTTTCCTACCTCACAGGAATTTGAGGACCAGAGGAGATAAATTGCTCATAAAGTATAATGTGCTATGCTCAAAGAGCTGTAAGAGCCTTTAAGAATCATCTTCTAGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCATTTGAGGTCAGGAGTTCGAGACCAGCCTGACCAAAATGGTGAAACCCCATCTCTACTAAATCCAAAAAAACAAATTAGCTGGGTTGGTGGTGCATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATTGCACCACTGCACTCTAGCCTGGTCAACAGAGCAAAACTCAGTTTCAAAAAAAAAAAAATCATCTTCTCAACATCCCGATTTCACTCAGAAAATATTTACTGAGTATCCTTGTGTCCCAGACCTTGTGCTAGGCCAGGGCCACCCCAGGGAATGAGGCTGCCAATGTCCCTGCCCTCTCCAGGTTCTCAGCCTCTCGGGGAGACAAGCAAAGGGAGTCATGACAAGGAAGCAAGATGTGGTAAGAGAGGGCTTTGGGAGCTTCCAATGGGGGACTCCACTAGGGGGCCAGAAGAGGCTTCTTGGAGGAAGTGACATATAAGTGGAGGCCTCAAGGAAGAAAACGGGAGGTTAGAGTGTTCCAGCAAAGTGAACAGCTTGGGTTGAGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGAGAAGCCAAGGCAGAAGAATCACTTGAGGCCAGGAGCTTGAGACCAGCCTAGGCAACATAGGGAGACCCTGTATCTACAAAAATAAAAAAAATTACCTGGGTGTGGTGGCATGAGCCTGTAGTTCCAGCTACTTGGGAGGCTGAGGTGGGAGGATGGGTTGAGCCCAGGAGTTTGAGGCTGCAGTGAGCTATGTTTGTGCCACTGCACTCCAGCCTGGATGACAGTGAGGCCCTGTCTTGGAAAGAAAAAAAAAAGAAAAGAGCAGCTTGTGTGAGGCTCACAGAATGGAGGACACACTCCAGGAACTAAGAGATTTGGATTGCTTGGAGAATGCAAGATGGTCAAGGGCAGGAGGACACTGGGTCATGGAGTTTGAAAGCCATAGTAAGGGGTTTTCACTTCATGCTGAAGGACAGGGGCGCCACAGGAGGCTTCTAAGCAGGTGAGGCATGGGCTGGTGTAGACCGGAGGCCCTGCAGTATCAGCACGGTGGCGGGAGGCCTGCTACTCCGAAGCAGCTCATTCCAGTGTTGGACGTTTCCAGCTGTGCCACCCGCTTGAGCCCAGACCCTGTGGCCTGGCCCTTGCACCAGAGGCACATACTCTCTCTTCTAG
Seq C2 exon
GAATTCTCCCGTTTCCACGAGGAGATCACCCCAATGTTGGACGGGATCACCAACAATCGCAAGGAGTGGAAGGCGCTTGCTGATGAGTACGATGCCAAGATGAAGGTGCAGGAGGAGAAGAAGCAGAAACAGCAGTCGGCCAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132915:ENST00000255266:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=NA C2=0.316
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(10.8=100)
A:
NA
C2:
PF0023314=PDEase_I=PD(7.6=38.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains