HsaINT1026502 @ hg38
Intron Retention
Gene
ENSG00000095464 | PDE6C
Description
phosphodiesterase 6C [Source:HGNC Symbol;Acc:HGNC:8787]
Coordinates
chr10:93655760-93659008:+
Coord C1 exon
chr10:93655760-93655860
Coord A exon
chr10:93655861-93658900
Coord C2 exon
chr10:93658901-93659008
Length
3040 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CACAGCTGTATCTTTTCTAGGAA
3' ss Score
9.36
Exon sequences
Seq C1 exon
AGTTTAAACATCTTCCAGAACCTAAATAAGCGGCAGTTTGAAACAGTTATTCATTTGTTCGAGGTCGCAATAATAGCAACTGACCTGGCTTTATATTTCAA
Seq A exon
GTAAGTACATAACTCTGCACAGTGGAATGCCCTATACTCTGTGTGGTTTTACCTTCCATAAATTATCTGTTGCATTAATGTTAAAAGGCATTTATTCACACACATACACACACACAGACACACACACACACATACACACAAAATTTGCTCTCCTTTTGGATTACCAAGTAGAGTATCTTCAAGACAGATGCCTGCCAGTAAATTTACTAGACCTCTGGGAACATATTTTAAAAACATAAGCTCCTAATATTAAGTAGGTTGCTCTCCGAACAGGTTTGAATTGCAGAATGTGCAGCCAAGTTTGTGCCTTGTCAAAAGAGTGAAGCCAAGAGACCTCTCAAGGTGGCTTTTTGTCCAGGTGAATTCTCTATGGTCCAGAATCTGGCATTTTAATGTTTCAGCCTCAGAAATTTAATTCTGTCAAAGTCTGGGAGCTGAACAATTTTGATGGCATTGACACACATTAACCAAACTTACAAAACTGAGTCATACGTAACAGAGAGCCAGCCTATTTACAACAGTAATATTGCCAAGGAGACCAGATACTCCCAGTATCTCCACATTTTCTCATAAGTGAACTATAAAGTTGCTTGATGAAAATGGGTTAGAACAAGATGAACTAGTTATAGGATGGAAATATTCAGTGGCTTGGGCATTGTCAAATTATGCCTTTCTGATCCTTCACTAAATATTTATTTATTATTTATTATTATTATTATATGTATTATTATACAGGTCTCACTCTGTCACCTGGGCTGGAGTGCAGTGGCACAACCTCGGGTCACTGCAATCTCGGCCTCCAAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTTCAGTCTCCCACCACCACATCTGGCTAATTTTTATATTTTTAGTAGAGATGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCCGACCTCAACTGATCTGCCCACCTGGCCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCGTTGCACTGGGCCTGAATATTTAATTATTAAATAGTTCAATGTGAAGACAAATACTAAGAATAATAAAATGGATATCCAAATATCTATAGCCTAAATTTAACAAATGCGAAATTTTGCCATATTTGCCTCAGATTTTGCTTTATAAGGAGAAAAAAACTAGTGATGCAATTGAGGTATTCCACCCCTACTCCACTATGAAAAATCCCTTCCCTTCTTCCACAAAGATATCACCGTCTGACGTTGATGTGTATTCATAATTTCCATCCATGTTTTTATATGGTATTGTTGTGTGTTGTTTTTTTTGTTTGGTTTCTTGGTTTTTTTGCGACGGAGTCTCACTCTGTCACCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGTAATCTCTGCCTCCTGGGTTCAAGTGATTCTTCTGCCTCAGCCTCCAGAGTAGCTAGGACTACAGGCACACGTCACCACGCCTGGCTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCTCTATCTCCTGACCTCGTGATCCACCCACCTTGGCCTCCCAAAATGCTGGGATTAGAGGCGTGAGCCACCTCGCCCAACCTGTTGTGTGTTTTCAAATTGTCCATAGGTGGTATCATACTGTCTGTACATACCTTTCTGCAACTTGCTTTATTCATGCAACATTGTGTTTCAAAGATTTATCATTGATAATAAATGGAGCTCCAATGCATCCATTTTAACTGAATAGAGTATTCAACTGTTGAATATTCATAATTAATTTACCCAGTCTTCTATTCATAGACATTTCAATTGTTTCTAATTTTTCATCATTGCCTACAATGCTACCTTGTATGTCCCTGTATATATATATGAGAGTTTCTCTAAGAAATGTAAAAGTGACAATGCTGTAGGATTTGCATGTCTTCAATTTCATGCTACATTACAAAACTGCACTCCTGAGAAGTTGTGCCAGTTAGCACTCCCACACACAGTGTGCAAGAGTTCCAGCTGAGTGAGGTGGCTCATGCCTGTAATCTCAGCACTTTGGGAGGCCAAGGCAGGAGGATCACTTGAGGCCAGGAATTTGAGACCAGCCTGGGCAACATAGCAAGACTGTCTCTACAAAAAAATTAAAAAATTAGCCAGGCATGCTGGAGCATGCCTGTAGTCCCACCTACTCGGTAGGCTGAAGTGGGAGGATCCCTTAAGCCTAGGAGTTCAAGGTTCCAGTGAGCTAGGATCAAGCTATTTCACTCCAGCCTGAGTGGTAGAGCAAGATTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAGAAAGAAAGAAAGAAAGAAAAAGAAAAATACCACATCTGAAGTACTCTTGAACTCAGCAAATTGAAATTTTATTTTGCTAATATAATGAGTGTGAGATAATATCTTATTGTTCAAATTTGTAGTTTCTTGATTAGTAGTGAGACCAGCTGGACATCCGTGTGTTTTGGGTTCCAACTTTTTGTTGGCTATATGTGTTGTGATATCTTATCATAGTTTGGGGCCTTTATTTTTAGGTTATGGTCTCTTTTCTCATATGTAATTTTGTATTTACTTTCATTTTTAAAGAGACAGGGTCTTGCTTTGTTGCCCAGGCTGGTTTAAAACTCCCGGCTTCAAGCAATCCTCCCACCTTAGTCTCCCAAAGTGCTGGGATTATAGATGTGAGCCACTGCACCCGGCCTTATATGTAACTTTTTCGTTGTAATGTATTCCAAGTTACCTGTTTTGTTTTGTTTTTCCCTCTCTCTCTCTCTCTCTCTCTGTATGGTTTGTGCTTTTTCTGCCTTAAACCCTTTCTGAGCCAAAGTTATACCACCATTCTCTGCTCTCGTATTTTCTGGCCCTGTAGACTTTGCTATGTGGACATCACAATGCAAAGTGGGAACGTGAAATCTGAAAAGCATGTATTTAAGATATTTTTTCTCTCTTTTCATAAGCTAAAATTGTTGCTCACAGCTGTATCTTTTCTAG
Seq C2 exon
GAAGAGGACCATGTTTCAAAAAATTGTTGATGCCTGTGAACAAATGCAAACGGAAGAAGAAGCCATCAAATATGTAACTGTTGATCCAACCAAGAAAGAGATTATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095464:ENST00000371447:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(13.3=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(14.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains