HsaINT1026918 @ hg38
Intron Retention
Gene
ENSG00000007541 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr16:580858-582309:+
Coord C1 exon
chr16:580858-580972
Coord A exon
chr16:580973-582247
Coord C2 exon
chr16:582248-582309
Length
1275 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
GCCGCTTGCTATCCTTGCAGCTG
3' ss Score
9.67
Exon sequences
Seq C1 exon
CTCCGGCTCCTGGTGGTCGCCGTGCAGGGCCTGATCCATCTGCTCGTGGACCTCATCAACTCCCTGCCGCTGTACTCACTGGGTCTTCGGCTCTGCCGGCCCTACAGGCTGGCGG
Seq A exon
GTAAGTGCTGCGTATTGGGCAGCTGGCCCTGGGTAGGTGGAGGGGAACCACACCTGTGGGCCCTGCAGAAGCAAGGACAGCATGGGCCACTGTGCCTCCAGCCTGGAAGCCGTGGTATGCATGCGCAAGCGGGCAGGGAGGACAGGGCCTCCTAGTCCCAGAGGTCTGCAGGACCAGCTGCCTCCAGGGAGGTGGAGAGAGACTCAGAGACTCACCTGCCGCGCAGGTTCAGAACCCTGGAGACCTGAGGCCACAGGCCTTTGTTCTTCTGCCTTGGGATTTTCTGGGCTTGGGAGTCTGAACTGCAGGCCAGGGGCCAAGCGCGGCAAAGTCAGAGGCACTAGGAGCCAGCAGGGCGGCCACCATCCAGTAAGTGCCCCGTCCGCTGTGCCGGAAAACCCCGTCCACTCAACAGCACAGCCTGCGCCCGTCCCTCACTGGGGCTCTTCCCTGCTTGCCGGACACCTGGCTTCTTTCAGTGGAGTCTGCAGGAGGCTTTTTTTTTTTTGAGACGGAGTCTCACTTTGTCGCCCAGGCTGGAGTGCAATGGCGCAATCTCGGCTCACTGTAATCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTAGGATTACAGGTGTGTGCCACCACGCCCAGCTAATTTTTTGTATTTTAGTAGAGATGGGGGTTTCACCATTTTGGCCACGCTGGTCTCGAACTCCTGACCTCGTGATCCTCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCACGAGCCACCGTGCCCGGCTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTTTTTGCCCAGGCTGGAGTGCAATGGTGTGATCTCAGCTCACTGCAACCTTCGCCTCCCTGGTTGAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTACAGGCACACGCCATCACACCCGGCTAATTTTTGTATTTTTAGTACGTATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCATGATCCGCCCACCTCCCAAAATGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCTGCAGGAGGCTTTGATGCCGGCCTGGCAGCCAGCTCCAGGAGTTGGGCGACGGAGGGGGCGGGGAGAGCTTCGTGGGTGGCCACGGCCAGCAGCACCCGGGTGCCCCTCAGAGAGGAAGGTACCTGCAGCCTCTGCTCATGTGTGGGGCCAGCCCCCACGCGTCCCCTCGTCAGCCGCTTGCTATCCTTGCAG
Seq C2 exon
CTGGCGTGAAGTTCCGTGTCCTCCGGCACGAGGCCGGCAGGCCCCTCCGCCTCCTGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007541:ENST00000321878:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PD(35.4=43.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains