HsaINT1027305 @ hg38
Intron Retention
Gene
ENSG00000182378 | PLCXD1
Description
phosphatidylinositol specific phospholipase C X domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23148]
Coordinates
chrX:276322-281684:+
Coord C1 exon
chrX:276322-276394
Coord A exon
chrX:276395-281481
Coord C2 exon
chrX:281482-281684
Length
5087 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AATAAGAACAAAATCTGCAGCCA
3' ss Score
-0.96
Exon sequences
Seq C1 exon
GTGTTTTAGGAAGAGTGTCCCGCAGAGACCCGGCGGGAGCTGCCAGGAGCTCTGGGATTCCAGCGGCTGGAAG
Seq A exon
GTGAGTGTGTCTACCCCGTTCTCCTGATGGCAAGTCCCCTACGGGGGACGTGGCGGGTGCCGTCTGTGCCTGTTGTGGGCTGGGAATCAGGAACCCGCGCTTCCGTCATTGAGGCTCCTTCTCCTCCTCCTGGGACCCTTAGCTGGGGGCACGGGCAGGGGGTTCAGGGGGAGGGTCGCCTGGGATCTGTGGCCTGGACGTTGGCAGCCACAGGCGGCCTGCACCCCTTGCAGACCGTGAATTCTCTGCCGGGTCAGAGCCGCGGAGCCAGTGTGGAAACAGCCCAGGACGGTTATGAAATGAGCCCGGGGGCCACGACTTGCTTGGCCGGTTGGACGTCCTCACCCTGCCGCCGGGGCCTGCGTGGGGACGGGTCGGGACAGCTGGGACGGTGGGGATGTTGGGGCACTGGGAATGCTGGGATCTGAGCACCCCTGTCCTTCCGTTGATTCACCCAGCAACCATTCACCCCGTGCGTTGAATGTGCGCGTCACGGCCACTCACGCCTCTGGGACGTGAGTCTCCCGAGGACTCAGCGGGCGGGAAGGTGTAGGTGTCTCACCCCGCCTGGCGGGTCACCGGGCGTCTGGGCCCGTCCGTCATCTGCGCTGTCCCGCCGCGACCGTGAAGGCCAGGGTGGAGAGGACCTCCCCCAGGAAGGGTCAGTGCTCCGTGGGACGGCCTCCAGACCCCACTCCGCTGTGCCGTCCGGACGAGATGGCAGAGGTGGCTGGGAGTGGGGGCCGCCCCCGGGGCTCCTTCCTGCTCCACTTTGTCATGTGTGGGGAAGGCGTCGGGGGACCTGGGGACAGGAGGGGGCGCCCCTCAGTGGTCAGGGGACTTGGGATGTGAGGGGAGGGGTCAGGGGGAACGTGGGGACAGATGTGGGGATAGGAGGGGACACCCCTCAGTGGTCAGGGGACCTGGGATGTGAGGGGAGGGGTTGGGGAACGTGGGGACAGGTGTGGGGACAGGAGGGGACACCCCTCAGTGGTCAGGGGACCTGGGATGTGAGGGGAGGGGTCAGGGCACGTGGGGACAGGAGTGGACACCCCTCAGTGGTCAGGGGACCTGGGATGTGAGGGGAGGGCTCAGGAGGACATGGGGACAGGTGTGGGGACAGGAGTGGACACCCCTCAGTGGTCAGGGGACCTGGGATGTGAGGGGAGGGGTCAGGGCACGTGGGGACAGGAGTGGACACCCCTCAGTGGTCAGGGGACCTGGGATGTGAGGGGAGGGCTCAGGAGGACATGGGGACAGGTGTGGGGACAGGAGTGGACACCCCTCAGTGGTCAGGGGACCTGGGATGTGAGGGGAGGGGTCAGGGCACGTGGGGACAGGAGTGGACACCCCTCAGTGGTCAGGGGACCTGGGATGTGAGGGGAGGGGTCAGGGCACGTGGGGACAGGAGTGGACACCCCTCAGTGGTCAGGGGACCTGGGATGTGAGGGGAGGGCTCAGGAGGACATGGGGACAGGTGTGGGGACAGGAGTGGACACCCCTCAGTGGTCAGGGGACCTGGGATGTGAGGGGAGGGGTCAGGGGGAACGTGGGGACAGGTGTGGGGATAGGAGGGGACACCCCTCAGTGGTCAGGGGACCTGGGATGTGAGGGGAGGGGTCAGGGGGAATGTGGGGACAGGTGTGGGGATAGGAGCGGACACCCCTCAGTGGTCAGGGGACCTGGGATGTGAGGGAGGGCTCAGGAGGACATGGGGACAGGTGTGGGGACAGGAGTGGACACCCCTCAGTGGTCAGGGGACTTGGGATGTGAGGGGAGGGGTCGGGGGACGTGGGGACAGGAGGGGACACCCCTCAGTGGTCAGGGGACCTGGGATATGATGAAGGTGACGGGAGGGGAGGGACTGTGACGGGGGAAGGGACTGTGATGGGAGGGAGGGAGTATGACAGTAGCCGGAATGGATGGAATCCGTCATGACACAGAGGATGTGAGTGTACAGCTTTGGGTCCAGCCTGTCCTAGGAGACACTGATTTCCTCGAGTCTTCTGAACCAAAAAGTATCTGAGACAGGTCTCAGGACATTTAGAAAGTGTGTTTTGCTGGCCGGGCACGGTGGCTCACGCCTGTCATCCCAGCACTTTGGGAGGCCAAGGCGGGCAGATCACCTGACGTCAGGAGTTCAAGACCAGCCTGACCAACAAGGTGAAACCCTGTCTCTACTAAAAATACAGAAATTACCTGGGTGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGATAGGAGAATTGCTTGAACCTGGGAAGCGGAGGTTGCAGTGAGCCGAGATTGCACCACTGCACTCCAGCCTGGGAGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGTGTGTTTTGCTAAGGTTGAGGACGCGCCTGTGACCGAGCCTCAGGAGGTCCTGACGACCTGTGCCCTAGGTGGTCGGAGGACATCTTGGTATTATGCATTTTAAGGAAACGTCAGACATGAATCCATACGTGTAAGACGAACCTTGGTTCTGTCAAGCGCGTCGGTGCGAAGAGACCCCCGAACAGGCTTTGTGTGAGCGATAAAGCGGTTCATTCACTTGGGTGCAAGTGGGCTGAGTCCGAAGAGAGAGTCAGCGAAGGGAGATGGGGGAGGGGTGGCTCAATAGGAGTTGGGTAGGTAATGGAAAATTACAGCAAAAGGTGGTTATCTATTGTCAGCAGAGGAGGGATTGCAAGGTGCGTGGTGCACAGATCATAAGACTCATTGTCCAGAGGACGAACGGCACAAAGTCGATTGATCGGCTAAGGTAGGGCAGGGAGAACTCACGATAGTAAAATGTTGTAATTTTAGTTAACCAGTTAAGGCAGGAACTGGCTGTTTTACTTCTCTGTGGTTTTTCCTTGGCTGCTCCAGACTTCTTGGCTCCTGCAGGCCACCTGGACGTATATGTGCAAGTCACAGGGGTGATAATGGCTGAGCTTCGGCTCAGAGGCCTGACAGGTTCAATCGGTGAAGGTGGGACTGCTCCACTGGTGGTGAGGCGGGCTTCCAGGTCATAAGGTAGATTTTAAAATTTTCTGACTGGCAATTGGTTGAAAGAGTTATTATTAGGCCGGGCACGGTGGCTCACGCCTGTCATCCCAGCACTTTGGGAAGCCAAGGCGGGCGGATCACCTGAAGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAGACCCCCGTTGCTACCAAAAATACAAAAAATTAGCTGGGAATGGTGGCAAGTGCTTGTAATCCCAGCTGTGCTGGAGGCTGAGGCAGGCGAATAGCTTGAATCCAGGAGGCGGAGGCTGCAGTAAGCTGAGATCATGACACTGCACACCAGTCTGCGCAACAGAGCGAGACCCTGTCTCTGAAAAAAAAAAAAAGAAGAAAAAAAGAGTTATTAGTAGAAAGGAATATCTGCATTAAGATAAGAGGATGTGGAGACGAAGGTTTTTTGTTTTTGAACGGGAGTCTCACTCTGTCTCCCAGGCTGGAGTGCAATGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAGTAGCTGGGACTACAGGCGCGCGCCAGCACGGCTAAATGATTTTTGTATTTTTACCAGTGATGGGGTTTTGCCATGTTGGCCAGGCCGGTTTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGTTGAAGTGCTCGAATTACAGGCGTGAGCCAGCGGGCCCCGCCCAGACCTGCATTTTAACCTCCCCTCCACCCCGCGGCCCCGGGACCCTGGGCATCCGGAGGCTCACAGCGGCCCTGCTGGGATGCTCCAGGCAGATCACTGCACAGCCCTGCAGGCAGAGGGGAGGCCGTGCAGGAGGAGGGGAGGCCGTGCAGGGGGAAGGGAGGCCGTGCAGGGGGAGGGGAGGCCGTGCAGGGGGAAGGGGGGCCGTGCAGGGGGAAGGGAGGCCGTGCAGGGGGAAGGGAGGCCGTGCAGGCAGAGGGGAAGACGTGCAGGGGGAGGGGAGGCCGTGCAGGAGGAGGGGAGGCCGTGCAGGGGGAAGGGAGGCCGTGCAGGCGGAGGGGGGTACGTGCAGGGGGCAGCGGAGGCCGTGCAGGGGGAGGGGAGGCCGTGCAGGGGGAAGGGGGGCCGTGCAGGGGGAAGGGAGGCCGTGCAGGGGGAAGGGAGGCCGTGCAGGCGGAGGGGGGTACGTGCAGGGGGCAGCGGAGGCCGTGCAGGGGGAAGGGAGGCCGTGCAGGGGGAGGGGAGGCCGTGCAGGGGGAAGGGGGGCCGTGCAGGGGGAAGGGAGGCCGTGCAGGGGGAAGGGAGGCCGTGCAGGCGGAGGGGAAGACGTGCAGGGGGAGGGGAGGCCGTGCAGGGGGAGGGGAGGCCGTGCAGGGGGAGGGGAGGCCGTGCAGGGGGAGGGGAGGCCGTGCAGGGGGAAGGGAGGCCGTGCAGGGGGAAGGGAGGCCGTGCAGGCGGAGGGGGGTACGTGCAGGGGGCAGCGGAGGCCGTGCAGGGGGAGGGGAGGCCGTGCAGGGGGAAGGGGGGCCGTGCAGGGGGAGGGGAGGCCGTGCAGGGGGAGGGGAGGCCGTGCAGGGGGAGGGGAGGCCGTGCAGGGGGAGGGGGGCCGTGCAGGGGGAAGGGAGGCCGTGCAGGGGGAGGGGAGGCCGTGCAGGGGGAGGGGGGGCCGTGCAGGCGGAGGGGGGCCGTGCAGGGGGAGGGGGGGCCGTGCAGGCGGAGCGGGGGGCGTGCAGGGGGAGGGGAAGCCGTCCTGGGCCTTTTCCAGCTGGCTGCAGAGAAGGGGCCAGCTCCCTCCTGGGGACCCGGAGCCGCGGTACAGGTGTGGTTGCTTCTCTTGGAGAAAGAGGCTGAGCTGACATCCCCCGGGCTGATAAAGAATGGGCTCCTCCTCCTGGGCCCAGCAGGCTCCCGGGACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCGGGCAGCAGGGAAGATCTGAGTTCATGTAGCTGGTGTTGGCTTAGGGTCTGGGAGGAAGGCTTTTGGGAAGATGTAAATAAGAACAAAATCTGCAG
Seq C2 exon
CCACCTGGGAAGCCTGGCCTCAGTGTGGAAGAGAAGGCAGCAGGATTATTACAGAACCTTGTGAAGCCAACGCGGGCAGCCGCCAGGAGCTGCAGACCGAGAGGATCTCGTCCTTTCTTGCGGCCCAGGGAGACCAGGCCTTTCATTCTGGGCTCGAGACCAACAATTCGAATTCCGAACTCCCCCTGCGTGTGGGACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182378:ENST00000399012:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains