HsaINT1027310 @ hg38
Intron Retention
Gene
ENSG00000182378 | PLCXD1
Description
phosphatidylinositol specific phospholipase C X domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23148]
Coordinates
chrX:291499-293218:+
Coord C1 exon
chrX:291499-291654
Coord A exon
chrX:291655-293034
Coord C2 exon
chrX:293035-293218
Length
1380 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
TTAACTCTGGTCCTTTGCAGGAG
3' ss Score
9.7
Exon sequences
Seq C1 exon
GACACACTCACGGAAATCTCGGAGTGGCTGGAGCGGCATCCACGCGAGGTGGTCATCCTGGCCTGCAGAAACTTCGAGGGGCTGAGCGAGGACCTGCACGAGTACCTGGTCGCCTGTATCAAGAACATCTTCGGGGACATGCTGTGTCCTCGTGGG
Seq A exon
GTGAGGAGGGGAAGGATATCCGCACGTCTCTCCCGGGGCAGGGGCATCGTCAGCCTCAGACTCCATTTGCTGTGCCCTGGGTGTGGGTGCTGCCATGATTCCTGTAGCAGGTGAAGCCGTCGAACGGGGGCTGCCTGCTCTCCCGCAGTGTGGGGGGCCCTGGCTGACCCGGTGGGGTGGCTCCTGGTGAGATCTGCTTCCCTTGACGGGTTTAGAAATGTGTGCAGCGTCAGCCGGGCGCGGTGGCTCACGCCTGTCATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAAGAGATCGAGACTATCCTGGCCAACATGGTGAAACCTGGTGTCTACTAAAAATACAACAATTAGGCTGGGTGTGGTGGCTCACGCTTGTCATCCCAGGACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATTGAGACTATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACCAAAATTATCTGGGTGTGGCGGTGGGTGTGCCGGACGCAGTGGCTCACACCTGTCATCCCAGGACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGACATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAACACAAAATACAAACAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGTGAACCCGGGGGGTGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCATTCCAGCCTGGGAGACAGAGCGAGATCCGTCTCAAAAAATAAAAAATAAAAATAAATAAATATATAAAAATAGAGACAGGGTCACCCTGTGCAGCCCAGGCTCGAATTCCTGGCCTCGAGTGATCCTCCCGCCGTGTCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCCCTGCACCTGGCCATACTTAATTTATTTATTTATTTGAGAGGGAGTCTCGGTCTGTCTCCCAGGCTGGAGTGCAATAGCGAAACCTCGGCTCACCGCAACCTCTGCCTCCCAGGTTCAAACGATTCTCCTACCTCAGCCTTCTGACTAGCCGGGATGACAGGCGTGCACCACCGCACCCGGCCAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGCCCGGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTCAGCCACTGCGCCCGGCCAGAATTTCATTTTTGGTTTATACTCGTGTTGGGCCGGTGTCCCGACTTCCCAGCCCTCCGCTCTCCCAGGTGCCCCCGGCTCTCCTCTCTCCCCTGCACCCCTTAACTCTGGTCCTTTGCAG
Seq C2 exon
GAGGTGCCGACACTGCGGCAGCTGTGGTCCCGGGGCCAACAGGTCATCGTCTCCTATGAAGACGAGAGCTCCTTGCGCCGGCACCACGAGCTGTGGCCAGGAGTCCCCTACTGGTGGGGAAACAGGGTGAAGACCGAGGCCCTCATCCGATACCTGGAGACCATGAAGAGCTGCGGCCGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182378:ENST00000399012:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=PD(29.4=95.5)
A:
NA
C2:
PF0038814=PI-PLC-X=PD(9.5=25.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACACTCACGGAAATCTCGG
R:
CGGCCGCAGCTCTTCATG
Band lengths:
334-1714
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains