HsaINT1028630 @ hg38
Intron Retention
Gene
ENSG00000126838 | PZP
Description
PZP, alpha-2-macroglobulin like [Source:HGNC Symbol;Acc:HGNC:9750]
Coordinates
chr12:9168869-9169591:-
Coord C1 exon
chr12:9169430-9169591
Coord A exon
chr12:9168975-9169429
Coord C2 exon
chr12:9168869-9168974
Length
455 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
GAACAATTATTTTTTTCCAGGGG
3' ss Score
6.98
Exon sequences
Seq C1 exon
GTATATAATCTGCTAACTGTGAAGGATCTCACCAATTTTCCTGACAATGTGGACCAGCAGGAGGAAGAACAAGGACACTGTCCCCGTCCTTTCTTCATTCATAATGGAGCCATCTATGTTCCCTTATCAAGTAATGAAGCAGATATTTATAGCTTCCTCAAG
Seq A exon
GTAAAATTCTCACTACTTATTAACATGCTGGCTTGTGAGTTTTTGAATGTTAATAAAACTCTGTATCTATTCATAATCTTAGTAATTATGTAGCCTTGCCTCTCCATTTTTCAGCAGACAAAAATGAAGCCAATAAAAAGGTTAAAGTCTCTTGTGAGGATCACACAAAAGCTCAGTATGTGAGTCAGGGCTAGATCTAACCTCTGCCTATTCATCTGGATACTTTTTAGTTATATTTAGGTTTTTTTATTTGCAAACCAAAAAATAATGAATAAAGAATAAAATCTTAATAATCCATAAGTTTAGTAATTTCACTACTCTATATTTACTGTCAAGTGTTTCGCCATAGAATTAATATAAGGATACTGGAATTACATAGAGAAGTCTCTAAGGATAATATGTTTTATATATTCTAATCAAGCTTACAAGTAGATTGAACAATTATTTTTTTCCAG
Seq C2 exon
GGGATGGGATTGAAGGTGTTCACTAACTCAAAAATCCGAAAACCAAAGTCGTGTTCAGTCATCCCTTCCGTGTCTGCAGGAGCAGTAGGTCAAGGATACTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838:ENST00000261336:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTGCTAACTGTGAAGGATCTCAC
R:
CTCCATAGTATCCTTGACCTACTGC
Band lengths:
262-717
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains