HsaINT1028882 @ hg38
Intron Retention
Gene
ENSG00000105122 | RASAL3
Description
RAS protein activator like 3 [Source:HGNC Symbol;Acc:HGNC:26129]
Coordinates
chr19:15464031-15464571:-
Coord C1 exon
chr19:15464505-15464571
Coord A exon
chr19:15464378-15464504
Coord C2 exon
chr19:15464031-15464377
Length
127 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GTCACTCTCTCGTCCCCCAGGAG
3' ss Score
10.46
Exon sequences
Seq C1 exon
GTTCCGAGGGAGGAAGCCAGGCGGGGTGCAGACGGCTGCTGATTCTGGGGCTGGTCAGGAAACCAAG
Seq A exon
GTAAGGGAGGGAGTGGAGGTGGGGGCAGGGGGATTCCTGGAGGCAGAGCTGAGGGTGGGGAGGGGGCCGAGATGAGGGCAGTATGTGGACAGACACTGGGCACTACTGTCACTCTCTCGTCCCCCAG
Seq C2 exon
GAGACCCCCCCCCCCAACCATGGACCCACCGTCGCCAAGCCGGACCTCCCAAACCCAGCCCACAGCCACCTCTCCGCTGACTTCCTACCGCTGGCACACAGGGGGCGGTGGGGAGAAGGCGGCTGGAGGGTTCCGCTGGGGCCGCTTTGCTGGCTGGGGCAGGGCCCTGAGCCACCAGGAGCCCATGGTCAGCACCCAGCCAGCCCCTCGCTCGATATTCCGTCGGGTCCTATCTGCGCCTCCCAAGGAGTCACGGACCAGTCGCCTTCGACTCTCCAAGGCCCTCTGGGGGAGGCATAAGAACCCACCGCCGGAGCCAGACCCGGAGCCGGAGCAGGAGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105122:ENST00000343625:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.982
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTGGGGCTGGTCAGGAAA
R:
AGGACCCGACGGAATATCGAG
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains