HsaINT1029232 @ hg38
Intron Retention
Gene
ENSG00000159496 | RGL4
Description
ral guanine nucleotide dissociation stimulator like 4 [Source:HGNC Symbol;Acc:HGNC:31911]
Coordinates
chr22:23696328-23696688:+
Coord C1 exon
chr22:23696328-23696494
Coord A exon
chr22:23696495-23696613
Coord C2 exon
chr22:23696614-23696688
Length
119 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGA
5' ss Score
5.27
3' ss Seq
CTGTCGCTGACACCTGGCAGGCG
3' ss Score
3.98
Exon sequences
Seq C1 exon
AGGGATGACGGTGAGAACAACGGCAACAGCTACAGGAAACTGAGCCCTCAGAGGCCCTGTGAGGTAGCTGTGGTTTGCATCACTCTTTACAGAAGAGGAAACAGTCTCAGGGAGGCCCGGCTGCAAGACTGGGTGACACACACAGGGAGTGTGGATCTGGGCCAGTG
Seq A exon
GTATGAGCACGGTGCCAGGTGGCTCCCGCCACTCCCTGGGGATCCAAGTGCGGGGTGGCTGGGGTGTAACTGGGGGAGAGGAGGAGAGCCTCACTGTCCCTGTCGCTGACACCTGGCAG
Seq C2 exon
GCGGGGAGCTTTAAGGTGGCCACCCAGGAGAGGAACCCCCAGAGAGTCCAGATGAGGCTGCGGAGGCAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159496:ENST00000441897:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.271
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PD(17.3=55.4)
A:
NA
C2:
PF0061714=RasGEF=FE(11.5=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGATGACGGTGAGAACAAC
R:
GCCTCCGCAGCCTCATCT
Band lengths:
234-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains