HsaINT1030455 @ hg38
Intron Retention
Gene
ENSG00000246089 | RP11-115C21.2
Description
NA
Coordinates
chr8:6403551-6406548:-
Coord C1 exon
chr8:6405706-6406548
Coord A exon
chr8:6405121-6405705
Coord C2 exon
chr8:6403551-6405120
Length
585 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATA
5' ss Score
4.18
3' ss Seq
TTTTTTTTTTTTTTCTCCAGGCA
3' ss Score
11.82
Exon sequences
Seq C1 exon
GTTTCCGGGATTTCTCTGTAGGTGAGGCGGGAGGCTGGAGGGAGCTGAGCCCCCGGGGAGGGGGCCCGATTCCGCCTCGCCGCGCCTCTGGCTGCTGGGCCGTGGGTTTTTCTCTTCTCCTGGGAGTAAGGAGGACGACGGCCCCTAACCCCTGAATTAGCCTTCTATTTCCATTAGTGACTTAGAAGCTACCCGGCGCCTCATCTGGGCTCACCTGAGCTGAGGATCAGGAAGGGGAGGGGGCACAGTCATTCCCTCGCGGACGCGGCGGGACCCCAGCGGACGGCTTTGTGCGGACTTTCGGCACCGTTATGCCCCCCTAGCCCGACACCACCTGGGGCTGGCGCGCCACGTTACTGTTCAGGGCCAGACGCACCGCCCTGCCTGCTCCGGGGAGCCGGACCTCCGATCCCGGGGATGGGGGACCCCGAGACCTCAGACCCAACGGAGGGGACTCTGATACCTCAGACCCCACGCGGGGACCCCGAGGCTTCAGACCCCCACAGGGTGACCCCGAGATCTCAGACCCCCGCAGGAGTACCTCCAGACCTCAAATCCCCAGTAAGGGAATGAAAGAGACTTCGGATCCCTGAGGCAGCAAATCCCTGTAGGGGCATCCCAGGACTCAGGTCACCGCGGGGTGAACCCAGACCTCACATTCAGGCAATCCCCAGGACGCCGATCGGCTGGCACTACCCACTGTCCCGGCCACCCCCCCTGGAGCTCAAAGGCTTGGCCCTCCAGCTGCTCCACCCTGCCGGCAACCAGGCTCAAACCTGCAGCCCGCGGATCCCCTGCCCCGGAAGCAACCAGATTCGCGGGAGGTTACCTGACTGATCCAAG
Seq A exon
GTGATACAGCTGGTAACTGATGGAGATGTTGGTAGTGAAATTCATGTACTTTTAGTTCTTTCTATGGAATCTAGAGGTAGAATACATGTAAAAGAATATCGACTACCGTCTACTCAGGTCTCTGTTTTATCTGTTTATTCATTCACTCTCAGCTTTTAATAGGATCCAATGAGCCCTCTGTGGTTCTGAAGAATTGCCTTGAGTATATGCAGCCTCAAAAAACCCACTTCCTAGGCTCAGTCTTTGATCAATATTTATCATTATCACCAGTTATTGTTCTAATAAACTCTACTCTGGAAATATGGTGTTATGGTTTACTTGGGAGTGTGAGTTCAGGGCATCATTGAAGACTCACGTACTTTTACTGAGAAAGTGACATTGATCTCTGTAGATTTTGAATTAAATGATATGATGAAGTATATAAACCAATTACTTTTGGTCAAGGTGGTAAAAAAAGTTTAGTATTTGATAGATTCTTCATCTCCACGATCACAAATATTTTCTCCTAGGATTTCTTCTAGAAATATTACTGCTTTAGGTTGTATATCAGGTCTAGGTTCTACTTTTTTTTTTTTTTTTCTCCAG
Seq C2 exon
GCAGTTTCTCACTCCGTTGCCCAGGCTGGAATGCAGTGGTGTAATCACAGCTCACTGCAGCCTCAACCTACTGGACTCAAAGGATAAGATCTGCTTTTAATTAATTTTTGTATACGGTATGGGATAGGGACCAAAGTTCATTTTTTTGCATGTATACATATCCAAATGTTCCAGCATCATTTATTAAAAAGTTATTTTTGTCTCTACTGCATTTCCTTTGTGCTTACATCAAAATCTGTGTTGCATATGTATGTGTTTCATTTTAGGCTTCCTATTGTGTTCCATTGAGCTATTTGTCTTTTTGCTGCCAGCACCATGCTGTTTTGATTATTGTAGCTATATAAATAAGTGATGAAATCAGATAGTTTATGTCCTACAACTTTATTTTTCAAGGTTATTTTGTATCTTCTAGATTCTTCAGATTTCCTTTTAAATCTTAGAGTCGACTTCTCATTTTGCACAAAAAAATACTGCTGGGATTTTGATTGAGATTGTGTTGACTCTACAGATGAATTTGGGGAGAATTGACATTTTAACCATATTGAATCTTCTGACCCATTAACATTTAGGTCTTTTAAAATTTCTCTGGCCAGACGCAGTGGCTCACGCCTGCCACTTTGGGAGGCCAAGGCGGGCCGATCACAAGGTCAGGAGATTGAGACCATCCTGGCTAACACAGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCATGCGCCTGTAGCCCCAGCTACTTGGAAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGACAGAGCTTGCAGTGAGCAGAGATCTTGCCACTGCACTCCACCTGGGGCAACAGAGCGAGACTCCATCTCAAAAAAAAAAAATATAACTGTTGTTAGATTTTAACCTAAGTATTTGTTTTTTTATTTTGTTTTTCTTTTTTTCTTCTTTTTTTTTTTTTTTTTTTTTTGAGACAGGATCTCACTCTGTCTCCCAGGCTGAAGTGCAATGGTGTGATCATGGCTCATCTTGAAGCCTCGACCCTCCTGGGATCAAGCTATCCTCCCACCTCAACCTCCTGAGTAGCTGGGACTACAAGTACACATGACCATGCCCAATTCATTTTTTAAATTCTTTGTAGAGGCGGAGTCCCACTATGTTGCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGCAATCCTCCCACCTCAGCTTCCCAAAGTGTAGGGATTACAGGCATGAGCCACTGTGCAAGGTCTTGTGTTTTTTGATAATATCGTAAATGGTGATTTTTTCATTTGTTTCTGATTGTTGCTAATATATGGAAATATAGTTGATATCTGCAATTGATCTCATGTCCTGAAAACTTGCTAAATCTGCTTAATAATTTTTTGTACATTCAAAATGATGTTCTACAGGTAGTCGTATTGTCTATGTTGGAAGGAAAGCTTTTCCTCATTCAATGTCGGTCCTGTGTTTGAAGACCTGCAAATTAACTGATAACAACAGGTTAACAGGAGAAAAGACAAGGTTTAGAGTAACTCACTAAATAGAAATAAAGGTTTATAGATCCACTTAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000246089:ENST00000500118:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGACCTCAAATCCCCA
R:
TTACACCACTGCATTCCAGCC
Band lengths:
347-932
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains