HsaINT1031971 @ hg38
Intron Retention
Gene
ENSG00000225032 | RP11-228B15.4
Description
NA
Coordinates
chr9:127816066-127817857:+
Coord C1 exon
chr9:127816066-127817343
Coord A exon
chr9:127817344-127817758
Coord C2 exon
chr9:127817759-127817857
Length
415 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GTCCGCCTCTCTTCCCTCAGGTC
3' ss Score
12.6
Exon sequences
Seq C1 exon
GACGCCATCAGCACTGCCACTCTGCCCCTGCCCCATCCCCTACCCTGTTGTGCTGGCCCATGTGGGCTTTGGTGCCAGCTCTGCTCAGCCATGGACCCTCGACTTCTCTGAACCTCAGTCTCCTCTTGCAGCAAACGGGCTCATCACAGCCAGGCCTGGCATTGAGCCATGGTTGCTAGGACTGTCCACCTAGAGGGCCCAGCCAGGCCTTTTGGGTCATGCCTCTGCCCCTCAAGGCTGATGGAGATGGCGTTTTCAGGGAGGATGGATGGGGTAACGTGAGGAAACTGAGGCTCGGGAGTACAGAGCCTGCCCCACCTGCTGCATGACCTTGGGTCAACCCTGCCCCTCTCTGAGGCCTTTAGCAGGTAGAGAATGGGCCAGAGCAGCTCCGAGTGCCCTGCAGCTCTGCTCTTGGATTGCTCCAAGCCTCATTCCCTCCACATTCCTGACTCCTGTGTGGCTATGGGCCAAGCAGTCTTTCCTTGAGCCTCTGACATCCGATTCTGTGTCATGGGGTTATCAGCCCTGCCTTCTTGGTCCTGGGCTGGGAGTGGAGGCTCCATCCTGGCCTGGATGGGGTGGCAAAGAGGTAGGTGCCCCCATCCCTCACCCCTGCCTCTGCCACCAGTGTCGGGACTCTTCTGCCTGGTGTGGGCCTGGGCCTGGGGGGAACTGATGGAGAGGCTAGAGGGGGCGTCCTGCAGGGAGAGGCCTCAAGGAAGGCAAGGCCAGCACCCACCCTCAAAGGGCCTCTGTCTCACCCAGGAGACTCCATCCTCCCAGCAAGGTCAGCCAATAACTGTGGGGATGGAGTGGAGCCGTGAGTGGGGGCAGAGGCCTAGACTCCCACCCCACAGGGCGGTCCCGGGCAAGGGCTCTCCATCTGCAAAGTGCAGCTCTGGCCCCTGCTCTAGGCTGCTATGGCTCTGGGAAGCCCTCCTCCTGCCCCTTCTGGGCCGCTTTCTCTGGGGTCCCCCTTGCCATGTGCTATGTGCCCAGGCCGTTTCTCAGGGCTGCCCGCTGTGCCCTACTGTGACCTCAGCCACTAGAACAAACCCGAGAGACCTGGAGGGAGCTCACCAGACAGGTCAGGGCTGATGATGTTCAAGCGCATGAAGACAGTCCTATGGACTTCCTGGAGGAGAAAGAGAGAGCAGTATGTGGCACCTTTGGGAGGCGGCTTCCAGGTTTACTCCCTGGCTCCGTGACCCCAGCCCACCCTAGAGCCTTGGCTTTGAATCCCATCTCCACCGCTTCGTAGCTGGATGCCTCTGG
Seq A exon
GTGAGTCCTGGAAGATCTGTGCTGTGGGAGGGTGCCTAGTGGACGATCCCTGGCTGCTGCTGAAATGTTTCCTGTGAGTTCCTGGAGGCCTTGATGCCCAGGAGCACTGTGGAAGCACTATGCATCCCTCACCCTTGTGAACACTTTGGAGCTATGAGCCAGGTCAGCCCAGAGTCCCAGGCTCACTCTGGCTGGAGGGAGAGGCCCACTTAGGGGAGTTGAAGGCTTCCCTAGCTTCCTATGACCAGAGAAGTTTGTAATCCTGGAGGCCTGTCTGTGCAAGGGCCTGGGGGTGACTCTGGGGGCGTCCAGGATAGATTGCCTGAGAGTGGGGGTCACCAGATGGTGAAGTGTTGTGACTGGCAAATACAGAAAGCCAGGAGTGTGTGTCCTTTGTCCGCCTCTCTTCCCTCAG
Seq C2 exon
GTCTCCTGTTCTTTGAGATTACACTGGTGACCATACTACATGGATGTGCGGGTGGTTAGATTCCTGGGTGGGAGGGTGGATGGATGGATGGACGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000225032:ENST00000439298:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCCCTACTGTGACCTCAG
R:
TCCATCCATCCATCCACCCTC
Band lengths:
346-761
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains