HsaINT1032161 @ hg38
Intron Retention
Gene
ENSG00000217576 | RP11-248G5.8
Description
NA
Coordinates
chr13:52253745-52254018:-
Coord C1 exon
chr13:52253937-52254018
Coord A exon
chr13:52253834-52253936
Coord C2 exon
chr13:52253745-52253833
Length
103 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
AATCCTAACCTTGAAATCAGGGA
3' ss Score
3.32
Exon sequences
Seq C1 exon
GTGAAAGAGCTTATGATCCTAAGCACTTCCATAATAGGGTCAGTAGAATCATGATCGATGATCATAATGTCCCCACTCTACG
Seq A exon
GTAAGTTTTATGCTAAGTTGACTATGAGAAGGGGGCTAAATCTATTGGGCTTGATTTTTTGAAAATATTTTAACTCAACTAAAAATCCTAACCTTGAAATCAG
Seq C2 exon
GGAGATGGTAGCATTCTCCAAGGAAGTGTTGGAGTGGATGGCTCAAGATTCTGAAAACATCGTAGTGATTCACTGTAAAGGAGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000217576:ENST00000451298:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAAGAGCTTATGATCCTAAGCAC
R:
TTTGCCTCCTTTACAGTGAATCACT
Band lengths:
170-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains