HsaINT1033442 @ hg38
Intron Retention
Gene
ENSG00000257681 | RP11-341G23.4
Description
NA
Coordinates
chr12:103766735-103768858:-
Coord C1 exon
chr12:103768807-103768858
Coord A exon
chr12:103766914-103768806
Coord C2 exon
chr12:103766735-103766913
Length
1893 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
3' ss Seq
TGTTACTGTTTTGATTCTAGCCA
3' ss Score
6.97
Exon sequences
Seq C1 exon
GTGCTGTCTAAGCTAATGTGGAGTTGTGTTTTCGGGTCCTCAGTCTGCTACG
Seq A exon
GTAAGGCCTGCATACAGTTGATACTTCATCCTCAACAAACTTGTGATGTTGAAGTTTTTCCCTTAACTATTAAGTAAGGGAGCCTACAGTTGAACCTGTTTCTTCTGGTTGTAAATCTCAGGTGTTTCTACAGAAGGTATTCTCTCTCTTTCCCTCTCTCTCTCTCTCTCTCACTCCCTCTCCCTCTCTCTCCCTCTCTCCCCCTTTCCCTCTCCCTCCCTCCCCCTCCCCCTCCCTCTCTCTCCCTCCGCCTCCCTCCCTCTCCCCCTCTCCCTCTCTCTCCCATCTCTCCATCTTTCCCTCCCCCTCCCTACCCCAAGTTTGTATGAAACCCTGCTTGTGATAACACAATTTTTTCAAACTTTCTTTTTTTGGATGGAGTCTTACTCTGTCACCCAGGCTGGAGTGCAGTGGCAGGATCTTGGCTCACTGCAACCTCCGCCTCTCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGAACTACAGGTGTGCACCACCACGCCAGGCTAATTTTTGTAGTTTTAGTAGAGACAGGGTTTCACCATGTCGGCCAGGCTGGTCTTGAACTCCTGATCTCAGGTGATTCACCTGCCTGGGCCTCCCAGAGTGCTGGGATTATAGGCATGAGCCACTGCACCTGGCCATTTTCAAACTTTTTAATGGGCTGTAGTATCCCAAGTGTTAAATTTTTTTTTTTTTTTTTTTTTTGAGAAGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCTATTCTCTTGCCTCAGCCTTGTGAGTAGCTGGAATTACAGGTCCGTGCTACCATGCCCAGCTATTATTTTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGTCAGGCTGGTCTCGAACTCCTGACCTCGTGATCCGTCCATCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCCGACCTCAAGTGTTAATTTTAACTGTGCCTAACACCTGGCTAATACCCAGGCCAAGGTTTCCCTTTGCCTTCTGAAGGAAGGGGTCTCGGTGCAAATCAATCACTCTTGCAGTGTGTCCAAATGGGAGGGGCATCTTCAACATTCTTTGGCAGGTTAATTGTATTTAAAAGACCCCAAAGCCAGCTCACCTGTAATATTTGGAAAGATGATGTATTATTTAGTTATCATGTCTTCTTTGAGATATAACTAACAAACAGCATACCATGAAATTCACTGTTTTAAAGTGTACAATTTCGTGTTTCTTAGTATATTCATAAGGTAGTACGACCGTCACTGCTATCGAATTCCTCATCATCCAAAAAAGAAACCCCATACCCATTAGCAGTCACTCCTCATTCCCCTGGCAATCAACCTACTTTCTGTCTCTATCAATCATCAATTTGCCTATTTTAGCCATTTCATATAAATGGAATCATATGATATGTGGTCCTTTGTGACTGGCTTCTTAATGTTTTCAAGGTTCATCTGAACTATTGCATGTATCAGTACTTCATTTTTTAGGGCTAAATGTTTTATTGTTTGGAATACCACAGCTTCATTTATTTTTCAGCTGATGGACATTCGAGTTGTTTCCATTTTTTTGGCTTTTATGAATAATGCTACTGTGAAGATGCATGTACAAGTTTTTGTACGGACATATCTTGATTTCTGTCTCTTGGATATATACCTAGGGGTGGCATTTTTGGGTCATATGGTAACTCTGTGTTTAACTTATTTTTTTGCCAAACTGTTTTCTACAGTGGCTGTACTATTTTGGATTCCCACCAGCAATGTATGAGGGTTCTATTTTCTCCACATCCTTTCCAATACGTGTTACTGTTTTGATTCTAG
Seq C2 exon
CCATCCTCGTGGGTGTGAAGTGACATCTCATTATGATTATCATGTCTTCTTAAAGAAGCAAACACAACCAAATTCAGAAGAATTTATAAGGCTGGTGTCTGATTGATTGAAAAGGCCCCAGGAAGTGGATTTTGCCTTCAGAGTTCAACTCCTCCTCTGGTGCAGTCCCAAAACACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000257681:ENST00000550029:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTAAGCTAATGTGGAGTTGTGT
R:
GTGTTTTGGGACTGCACCAGA
Band lengths:
224-2117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains