HsaINT1033819 @ hg38
Intron Retention
Gene
ENSG00000259515 | RP11-365N19.2
Description
NA
Coordinates
chr14:102933574-102937177:+
Coord C1 exon
chr14:102933574-102934165
Coord A exon
chr14:102934166-102936941
Coord C2 exon
chr14:102936942-102937177
Length
2776 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
GAGCACTTTGGGAGGCCAAGGTA
3' ss Score
-11.3
Exon sequences
Seq C1 exon
AAAGATTTGTCTTCTTCATCTCCATATCTACAAAGTGATTCTACATTTCCTTGGACAACACTGGAGGGCCCGCTCAGTCTTGGCACTGACGCTGGAGGCCATCTCCAGCTCCCTGGCCCCTGTGGCGAGCTGGCGGCTTCAGGTGTCACAGGCCGGCTGCTCCAGGCCTTCGAGGGGGAGCTGGCTCCTGTGGGGGGAGTTGGGGCTCGGTGGGCCGCTGGGGTTGGAGCTATTCGATGGAGTTGAGTGTTTGGTGGAGTCCGAATCAGGCTGTGAACAGGAAGAGGGCAGGGTGAGCACCCGCTGCCCTAGCCTGGGGAGGCACGCGTGCCCAGCTGGATGCAAATGTTTGCTCAGGGACAACTGTCGCAACTGCTCTTCTCCCTTCATGTTATGAAAACACACACGCTCTACACCAGCGATTCGTGGGGCCCTTAGGCGTGCTGGTGAGAGTCACAAATTGATGTCTAATCCCACTCAAAAATAACATGGTAATTATCATTACAAAAGACAGCAACTCTGTAGTGAAGAAATCAGATGGGGCCGGACGCAGTGGCTCCTGCCTGTAATCCCAGCACTTTGGGAGGCCAAG
Seq A exon
GTGGGTGGATCACACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAATGTGGTAACACCCCATCTCTACTGAAAACACAAAAATCAGGCCGGGCGTGGTGGCTTACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCACAAAGTCAGGAGATTGGGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGCAGCATGCACCTGTAGTCCCAACTGCTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGACTGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCACAAAACAAAACAAAACAAAAAAAACAAAAATCAGCCGGGCACAGTGGTGCGCACCTGCAACCAAGCAGTCAAAGTCACAAACGCGACACTCTTTCCTGAGAAAAGCACTAGGAATAGAGGGGAACCTCCTCAACAAAATAAAACAGCTAACCATACCCAATGGTGAGAGACAAAATTTTCCCCTAAGATCAGCCACGGGCCGGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCAGATCATGAGGTCAGGAGATTGAGACCATCCTAACACAGTGAAACCCTGTCTCTGCTAAAAATACAAAAAAAAATTAGCCTGGCATGGTGGTGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCATCACTGCATTCCAGCCTGGGCTACATGTAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAGAAAAAAAGAAAAAAGATCAGCAACAAGGCAAGGATGCCTGCTTTCACCACTGCTATTCAACATGGGGCTAGAGGTTCTAGGCAGAGCGATCAGGGAAGAAACAGAAATGAAAAGGATTCCAAGTTAGGAAGGAAGTAAAGCTATCTCTCTTTGCAGATGACATGATTATACACGTAGAAAATCCCAAAGAAAAGAATCCACAAAAAACTAATAAGCTCAGCAAAGTTATAGGGTATAAGATCAACACACACAAGTCAGTTGTGTTTCTATACACCAGAAATGAACACACTGAAAAGGAAACTGAAAAAAAAAATTCAATTTACAACAGCATCCAAAAGAATAGCTAGGAATAGTTTAACCAGAGAAGGGAAAAATGTGTACACTATAAATTACAAAACATTGCTGAAAAAATAGCTTAAATAAATGGAACACATCTCATGTTCGTGGAGTAAAAATATTGTTAAGATGGCTGTACTAGGCCGGGTATAGTGCCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCAGATCACTTGAGGTCAGGAGTTTGAGACCAGTCTGGCCAACATGGTGAAACCCCGCCTCTACTAAAAATACAAAAATCAGCCAGGTATGGTGGCGGGCACCTGTAGTCCCAGCTACTTGGGAGTCTGAGGCATGAGAATCACTTGATCCCAGGAAACAAAGGTTGCAGTGAGCCAAGATCGTGCCACTGCACTCTGTCTCAAAAAAAAAAAAAAAAAAAAGACATTAATTATGAGGAATGTAAATAACGACAACCCATAGAACAAGAGAAGACATCTGCACATCACATCTCTCACAAGAGCCTGGTACTCAGAACATGCCAGGAGCTCCTACAACCCAGCCACAAAAGGACAAACCACCCATTTCAAAAATGGGTAAAGGCCTTGAGTAGACATTTCTCTAAAGAAGGTACGGAAATGGCCAACAAGCATATGAAAAGATGCTAAACATAAGTCTTTAGAGAATGCAAATCAAAACCACAATCAGGTACTACTTCATAGCCACCAGGACGACTATTAAAAAGAAGAAAAACAAGAACAAGTATTGGTGAGGATGTCGAGATATGAGAACCCTCACATTGCTGGTGGAATATAGAATGGTACAACTGCTGCAGAAAACAATTTGGTGGTTCCTCAAAAAGTTAAACATAGAATTACCACATAAATCCAGCAATCCCACTCACAGGCATAAACCCGAATGTGAAAACAGGCACTCAAACACATATGTGCACACACGTGTTCACAGCAGCACCACTCACAACAGCTGAAGGACAGAAACAGCCCAAATGTGCCTCAGGGGAAGAATGGGAAAACAAACCGTGGTCTAGCCATACAAGAGAATATTATTTAGCAATAGAAACGCCAGCACTGATGCATGCTACACAACGGGGGTGAGCCACAAAACAGTATGCCAGGTGAGAGCTAGGCACAAAAGGTCAAACACACTGCCATACGAGAGGCTGGGCATTCCATTTCCACGAAATGTCCAGACAGGGAAATCACAGGAAACTACTGGCTGCCCAGGTGCTGAGGGGAGGGAGGGACGGGGAGAGAGTGCTTAAAGGGCAGGGGGTTTATTTTGAAATGATGAAAATGTCTTTTTTATTATGTTTTAGAGACAAGATCTCACTACACTGCCCAGGCTGGCCTTGAACTCCTCAGGCCATCCTTCCACCTCAGCTTCACTAGTAGCTGGTACTACACACGTGAACCGTGGTGCCCAGCTAGAGTGGAAATGTTTCTGAATGAGAAAGAGGTGGTGACTGCATCTCTGTGGATGTACCAAATGTCACTGAGTAGTTTAAAGTAACTTTAAAGTAGTTATTTTGGGCCCGGTGTGCTGGCTCACGCCTGTAATCTGAGCACTTTGGGAGGCCAAG
Seq C2 exon
GTAGGAGGACAGCTTGAGCCCAGGAGTTGGGAGACCAGCCTGGGCAACAAAGTGAGACCCTGCCTCTATATTATTATGAAAATAAAAAAAACAAAAAAATTGTTGTTTTGTGAATTTCACTTAAATTTAAAAGAACAAACAAGGTCATGCAGACGAGACAGGCACTGGCTGCCTCAGGACACAGTACCCTAAGAGGGACACCATGTCCTCTGTATAATGTGACAGCCTAAGACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000259515:ENST00000560931:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains