HsaINT1034178 @ hg38
Intron Retention
Gene
ENSG00000231138 | RP11-391M7.3
Description
NA
Coordinates
chr10:123776670-123777749:+
Coord C1 exon
chr10:123776670-123777113
Coord A exon
chr10:123777114-123777387
Coord C2 exon
chr10:123777388-123777749
Length
274 bp
Sequences
Splice sites
5' ss Seq
AGGGTCAGG
5' ss Score
2.6
3' ss Seq
CTTCTTCCTTTTCTCCACAGAAG
3' ss Score
11.52
Exon sequences
Seq C1 exon
AAAATGGCTAATGATCCAATATTCGCTGAGAAACACAGGGCCAAGATGTAACTATCCTCTCATCAAAACCGTAGGAATTCTGTGAATACAGAAGTTCAAACACCGGATGGAAATGGGGAGAAAATGAAAACTGCCTTTTTTTTAGAGTAGTGGGTTCGTGGAGGATTTGTCTTTAGGCTTTTGGTTTGCATTTGATGCTGACACAATATTGTTTATCCAGTGAATGCAAGTTTTTGTTTTGTTTTGTTTGTTTGTCTTTTAAAGAGGAGAGTGGAGAAGAGGAAAGTTCTCTTCTGCCATCGTTCCTCATTTGTCTGAGAAACAGGCACCGCACCTGGCCCAATGGAAAAGAAATTCCAGAAGAAGGGAAGAGGGAAGGAATGGAGTTGAGTGTGTCTGGATCTAAAGGCTTGCTGCTCCGCCCTGGCTTCCTGTCCCCACAGG
Seq A exon
GTCAGGCTGAGTGTGGTGCAAGTGGGTGGGTCAGCCATGGTCCCCACAGCCTGATGTCCCCGGCCATCCTTAGTTGCCCTGGAAATCAATGTCATTAGATGGCTGCCTTCCAGCCTGTGTCTGCCTATGTTACTTTTTTCCACCCATATCACACTGTCTACATATGGGCCATCAGCCAGTACTTCCTGGGCATTTGGGACCTGACAACACTGTGCCCAAACCAAAGTAGGTCATTAACCTTGTCCTCAAAATCACTTCTTCCTTTTCTCCACAG
Seq C2 exon
AAGCACACCAGGCCTCTCTCTCTCCCCAACTCACTCCAACGGGTGACCTCCACTGGGCAGCCTGCCTCAGGAATGCCTCTCCTCTCATCCTTCTTCAGGCACAGAGGCCCGCCCTCCATACAACTTCCAGAAAGACAGCTCTGCACACCTAAAGAACCTCCCAGACCCCTGCATCAGGACAACAGCCTCTCCTGGCACTCAGGACCAGCCTCCTCCTAGCTGCCTGCAAATTGTCACAGAACACACCTGTCGGCTCTGACCCCATGCCTTCACTCTTGCTGTCCTCTCTGCTCAGAGCACCCTCCCACCACCCCTGCCTGCCAGTGCCAGCCACGCACGTTGGATGACAGCTGACCCCCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000231138:ENST00000446888:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGGCCCAATGGAAAAGA
R:
GAGAGGCTGTTGTCCTGATGC
Band lengths:
304-578
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains