HsaINT1034263 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr10:14842134-14844727:+
Coord C1 exon
chr10:14842134-14842846
Coord A exon
chr10:14842847-14843370
Coord C2 exon
chr10:14843371-14844727
Length
524 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
ATTGTTGCTTTGTTTTTCAGGGT
3' ss Score
10.46
Exon sequences
Seq C1 exon
CCAGAAATGCGGTCCTTGGACCTGGCTTCTCAGCAATTATCCCTGAGAGGGAAGATCCTGGAGATATCCTGAGAGCACACAGAGCTTCCCCACACCTTCAGACTTGCACCTTGCTGTCCAGAAGCTGCCTAGCCCTCCTTTCCAACCCACAATGGCCAGTGCCAATAGCAGTGCGGGCATCCGGTGGTCCAGACAGGAGACACGAACTCTTCTCTCCATACTAGGCGAGGCAGAGTATATTCAGCGCCTCCAGACTGTGCATCACAATGCAGATGTCTATCAGGCTGTGTCTAAGCGAATGCAGCAGGAGGGCTTCCGCCGCACCGAACGTCAGTGCCGCTCCAAGTTTAAAGTTCTGAAGGCATTATATTTAAAGGCCTATGTTGCCCATGCCACAAGTATGGGTGAGCCACCACACTGTCCATTTTATGATACGTTGGATCAGCTTCTCCGAAATCAGATAGTGACTGACCCAGACAACTTAATGGAGGATGCTGCTTGGGCCAAGCACTGTGATCAGAACTTAGTGGCCTCTGACGCCCCAGGGGAAGAGGGAACCGGCATTCTAAAATCAAAAAGGACTCAGGCAGCTGATCATCAGCCTATCTTGAAAACAGTTAAGGCATCAGATGAGGATTGTCAGCTAAGAATCAGTGACCGGATACGAGAAACCAGTGACCTTGAGGACTCCTGGGATGAATCCTCGGGTGCAG
Seq A exon
GTAACTCCCAAGCATGTGAAGGAGTTGGGTCCCAGAGTCTTGTGGCTCTAAACATTTAGCTGTGTCTGTTTGGATAGTGTCCTCTTCAGCATAGTTCCTGTTTCTGCCTCATTCTGCCCCACGCACCTTTTCAAAAACCTAATAGTAAGCTAAAGGGTTCCAGGTTTTCAAAAGCTATGCCCCTGGCAACATAAGGTATTAGAACCCTTTAAACCTAGAAGTGCTCTCTAGAACCAAACTAGTTCTGGCATTATTAATAACTGGTAGTCAGGAAATTGTAGGTCTAGAGTGGGTTGGATAGCTATGTACAAAGGGGTTCAGGAAGGCAAGGGAGAAGTTTTAGAGGTGAAATCAAACAGGTCACAATTGTCCAGATTAAGGAAATGGATTCTTCCCAGTCCCTGGTGGAAAGAGGCTTTCCAGGAACAACCATAGTTTTATAATTTGTCTCAGCTCTGCTGCTGGCTCCAAGCATTCCCTTAGCAGGAATGTTCTCTTTGCAACATTGTTGCTTTGTTTTTCAG
Seq C2 exon
GGTGCTCTCAAGGGACCCCCAGCTACAGCAGCTCCCACAGCCTTTTCAGAGGTGCAGTTGCTCCCTGTCAGAGCAGCCCCATGGCCAGACTGGGTGTGTCCGGGGAGCCCAGCCCCTGCACCAGCACCAACCGCAGCACTCCTGGGGTAGCCTCCACACCGCAGACTCCAGTCTCCTCTTCGAGAGCTGGTTTTGTTTCTGGTGGGGATAGGCCCTTGACCAGTGAGCCCCCTCCAAGGTGGGCAAGGCGAAGAAGGCGGTCAGTGGCCAGGACTATCGCAGCCGAGTTGGCAGAAAACAGGCGATTGGCACGAGAACTCTCAAAGCGGGAGGAAGAAAAACTGGACAGGCTGATTGCTATTGGTGAGGAGGCCAGTGCTCAGCAAGATACTGCCAATGAGCTCCGCAGGGATGCTGTCATCGCAGTCAGACGTTTGGCAACAGCAGTGGAAGAGGCAACTGGTGCTTTTCAGCTAGGCCTTGAAAAATTGCTTCAGAGGTTGATTTCGAATACCAAAAGCTAGGAACCAATTACAAAAGGCTCTGCTTCCTAAACTGGTAGAAGTCTAGTTCCCAAACCTGCCTTCTGAATCCCTGGCTCCTTTTCTGTGTCCTCAGAAAAAAACATGGATGAACCATTTATATCCAGATAGTATGAAAATAATTGCTAGTTCATTTTCCCAAGATTCTCCACCAAATGGAAGACCTTTCAGAAATGCCAGGGGTGACCTAATAGAAAACGATGGAGCCACGTTCTAGACAGCTGGTTCATCCTAGCTTTGTCACAGATGTGAAGCAGTTTACCTCCCTCCAGTGGTTTCCTCATCCGTAAAATGGGGATCAATAATAACTCCTGCCCTGCCTACCTCACAGGGTTGTTGTGAGGATCACGTAGTTCATAGATGTGAAAGGGTTTAAAAGTTTAAAAGCACTGTACACATTTAAGTTATTAATTCATATGGCCTTGGCTGAGGTAAGGCAGATTGGTTTACAAGATACAGAAGTATGGATATATACTGTGACTTCATTGCTTGAATCTTTCCTTTGCTGGTCTAACTTGACTGCTTCATGGAGTTTGAAATCTTAATTTTTAAAATCCCTGTGTGGCTCATTAGACGACTATAAGCACAACCTGTATTTGTACCTTAATCTCTTACATTTCCACTGCTGTGTATCTGACATATCTACTAGTAAGCACTGTTTTGTCAAACCGTCTTTCTCTCCTTCATTTTACTGGTTCTTAGTCTCCTATCAATATAAGGAAATAAGAAGTGCCAGGGAGCCGCCATTGTGTGTTACGGTTTATATCGATAATCTTCAATATAAAATACTGGCCATTTTATAAAATATTAAATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000284024:ENST00000640019:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF138371=Myb_DNA-bind_4=WD(100=48.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTGGGATGAATCCTCGG
R:
GCTTTGAGAGTTCTCGTGCCA
Band lengths:
354-878
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains