HsaINT1035592 @ hg38
Intron Retention
Gene
ENSG00000240291 | RP11-499P20.2
Description
NA
Coordinates
chr10:18541169-18542177:-
Coord C1 exon
chr10:18542069-18542177
Coord A exon
chr10:18541249-18542068
Coord C2 exon
chr10:18541169-18541248
Length
820 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAC
5' ss Score
7.48
3' ss Seq
TGCCCTGATTTCTTCTGAAGAAC
3' ss Score
6.24
Exon sequences
Seq C1 exon
GTTGTCACCAGGCTGGAGTGCATTGGTACAGTCACGGTTCACTGCAGCCTCCACCTCCTGGGCTCAAGGGATCCTCCTATCTCAGCCTCCCAAGTAGCTGGGTCTACAG
Seq A exon
GTATACTCTACCACCCCAGCTTAATCATTTTTAATATTGCGTTTTCTTGGGGGTAAGGGAAATAAGGAGTTAAATGTAAAACAGTTTTACTTATAAAAGGCTAAGAATATTTGGTAAGAACTTGGAATAATCAAGGAAGCAAAACAAAGTAGATTTTATAATTTTGCTGGATAGTTTTTTTTGTTTTTTGTTTTTTTTTCTTTTTTGGAGATGGAGTCTCACTCTGTCACCCAGGCTGGAGTACAGTGGTGTGATCTTGGCTTACTGCAGGCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGTGCACCACCACACCTGGCTAATTTTTTATCTTTTTAGTAGAGACGGGGTTTCGCCACGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCTCCTCAGCCTCCCAAATTGCTGGGATTACAGGCATGAGCCACTGCGCCCGGCTGATTTATTTTGTTAAATAAGTTAATGTGCAGATCTGAAGTTAGGTAATTATACACAGGCATTTTCCTGGGACAAACTTCAAGTGCCAGGTACTTGCACTCTTAATACTGTCTTACCATCCAGTTATAACTGGACAAAATATACACTTGAGACACGGAAAAGGTCTTAGCCTTAAACATGATGACATTGTAAGCTTCTTACAGCAGTGTAATTGAGGCATGGAGATAATGTCTTCAAGGTTCCCCTTCTGTGTACATGTCTTATGTAGGATAATATTCTTAACATTTTATTCACTTCAAGTCACCCCATTTTGCCCTGATTTCTTCTGAAG
Seq C2 exon
AACAGAAACTTTGGTTATAAGAAGCACTTCTGGGTTCTGACAGACAGTGAACCTGCTGGAGTCGGTGGTGGGGAGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000240291:ENST00000425669:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTCACCAGGCTGGAGTG
R:
CATTCCTCCCCACCACCGA
Band lengths:
189-1009
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains