HsaINT1037736 @ hg38
Intron Retention
Gene
ENSG00000214776 | RP11-726G1.1
Description
NA
Coordinates
chr12:9572995-9574972:+
Coord C1 exon
chr12:9572995-9573149
Coord A exon
chr12:9573150-9574857
Coord C2 exon
chr12:9574858-9574972
Length
1708 bp
Sequences
Splice sites
5' ss Seq
AGATAAAAT
5' ss Score
-15.5
3' ss Seq
TCATGATAGGGTTTTGGTCGAGC
3' ss Score
-11.95
Exon sequences
Seq C1 exon
ATTTTCAGATACACTGGAATTCGCAATAAATCCAGTATGGTGGTTATAGATGTAAAAATGCTATCAGGATTTACTCCAACCATGTCATCCATTGAAGAGGTAAATAATAGAAGCCTAATCTTTCAGCACAAAGACAGCTACATAGAGTATAAAGA
Seq A exon
TAAAATAAATACTTGTTCAGCCATAGTTTAGCAAAACAAAACTATAGAATTCTTCTTCAACATTCACCTTTGTATTTTTGCGCTAACACTGGAGAGCTGGTTTACTTAATTTGTACCAATTAGCAGTCAGTATTTCCCATGGATCATCATATATTTTTCTTTAGTTGCTACCTGTGTTTATGAAAACATCACGGCACCAAGGAATGTTCCATAAAACAGAACGTGACGTAGAAAAGAGTGGACATTGAGTTCTGCAGTGGCGCTGTCATTTTTTCTAATATCTATTCTCTATCCTTCCCTAACAATTTCTTCAAAGCTTGAAAACAAGGGCCAAGTGATGAAGACTGAAGTCAAGAATGACCATGTTCTTTTCTACTTGGAAAATGTAAGTTTAGCCATATTTTTTTTTCTTTAAAGTTTTTCTTTTTTCCTTCCAAGGATAATTGGATGCTTCAATTTCTTATAGATATGTATGATAGGATTTGTAAAAGGAAAAAATAAGGGACGTTAAGGATTACCAGTGTTTTATCCCACTGATCATCTTCTCCTTGCTAGTTCCAAGGCTATTTCATATATGCCCTGGCTATGTGACTAGATAGCTTTCCATTTTAGAAACATCATCTCCCTATCAAACACAGTCTGGTCACAGAGTAGATATGTAATTATTTTATAATTTGACTAAACTCTTACAAAGTTTGCCATAATTTTTTGAAATTACAATTGCGTATTGAAGGTATGTGGTGTGACGTTTTGATATATATAGTGAGCTGACTGTTATCATCTAGCGTGACTATATGTGAATTAGCTGACTAACACATCCCTCTCTTCACACAGTTACCTCTTCTTTTTTTGTGACAAAGCACTTAAGATCTACTCCCTTAGGGAATATTACATATACAGTACAGCATTGTTAACTGTAGGCCACCGCTGTACCCGAGATTTGTAGAATGTATTCATCCTGCACAGCTGAAGCTTTCTATCCTTTGACCAGCATCTCCCCATTTTCCCATCCCTGATAACTGCCATTCTACTCTCTGCATCTATGAACTCAACTTTAGATTTAACTTACAGGTGAGATCCTGCAGTGTTTTTTGTGTGTATCTGGTTTGTTTCATTCCACATAATGTCCTCCAAGTTCTTCAGTGTTGTTACAAATGGCAGAAATTCTTTCTTTTTTGAAGGCCGAATAATTTGTATGTGGATATGCCTCAGTTTCATTATCCATTCATCTGTTTCGAACACTTAGGTTGATTCCTTATGTTGGCTATTGTGATTAATGAAAGAATTAGCATGGGACTGCAGCTGTCTCTTCAAAATATTCATCTCATTTTCTTTGGATGCATACCCAGAAATGGGATTGCTGGATCATAGGGTAGTTCTATTTTTATTTTACTGAGGAAACGCCAAACTGTGGCATGCGCTTTAGGGACATCCTTTCTATGTGTATTGTTACCACTCACATAAATGCCTACATTCCTCTAAGACTTCCAGCTAAATTCCTCTCACCTCAATGTAAGCAAAGGAACTTGAAATTTTATATGATTTAAGGTTAACAACTCATTACTTTGCCAATATGTAAGTTAATCATACCCTAGATCTATTTAATTATGTAGATCATAAACTTCTGCGGATAATTTTCTCAGTGATTATCTTTTCTCAGACCTGCTACAATGTAATTATAATTTGTGTCATGATAGGGTTTTGGTCG
Seq C2 exon
AGCAGACAGTTTCCCTTTTTCTGTTGAGCAGAGCAACCTTGTGTTCAACATTCAGCCAGCCCCAGCCATGGTCTACGATTATTACGAAAAAGGTAGGCAAGCAACAGCCATGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214776:ENST00000518709:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PU(51.2=78.8)
A:
NA
C2:
PF076779=A2M_recep=FE(47.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTCAGATACACTGGAATTCGCA
R:
GGGCATGGCTGTTGCTTGC
Band lengths:
270-1978
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains