HsaINT1037737 @ hg38
Intron Retention
Gene
ENSG00000214776 | RP11-726G1.1
Description
NA
Coordinates
chr12:9532574-9536324:+
Coord C1 exon
chr12:9532574-9532654
Coord A exon
chr12:9532655-9536198
Coord C2 exon
chr12:9536199-9536324
Length
3544 bp
Sequences
Splice sites
5' ss Seq
GTGCTAAGT
5' ss Score
2.08
3' ss Seq
AACTACACCTTCCCCCATTAGGT
3' ss Score
-8.49
Exon sequences
Seq C1 exon
TGCTGCCCAAGTTTGAAGTTACAGTCAATGCACCACAAACAGTAACTATTTCAGATGATGAATTCCAAGTGGATGTATGTG
Seq A exon
CTAAGTGAGTATTTATTCAGATTTACCTTCACAAGAAAACACAAAGCTCAGAGAGAATGAGAAGTGAGATTAACCATAAAACTTTAATTATTTATATGCTTACATTAGTGTTATTAGAGAAGCAATGAATCCTCATTGTAGAAAATTTGAAAAATATAGAGAAAAACACAAGACATTACCTATTATTAATTTGACCAACTGCCATTAACATTGTAATGTCACTAACATTGTAAGTTTCCTCTAATTTTAATGAATATTTTCCATGACTGCAATCATACTTTTCTATTTATAATAATTAAGAAAACATGCCTTCATATTATGCCAATCTTTTCATGAATTCCAATTTTCTGCTGCACATATTTTTATGTGACTATACCAAATTTAATTATTTTATTATATAATATGTCGGCTGTTTCATTTTGTTTTCCTGGTAATTAATAATTTTGCAGTATATGTCTTTGTGTATAACATATAATAGGTAGCTTTTGAATGAAAAATTATTTACTTAAGAAAGATTTCCAGACAAGGAATTACCAAGACAAAATATGTAACATTCTTTTAGTCTTCTGATTGCCATACTCCTCACTACACATGTTGTGCCAGTGTAGAATTCTAGCAGCTGGTGTGAAATTCTCATTGAATCTTTACTATCATGGCATATTTTCATTAAAATTAGAATATGAGCTATTGAAATGGCAAAGTGAAGATAAAGCATCTTATCAAGTTAATCTGAATTATTTGAATTCTCTTAATGTAAAAAAATCTACACGATTTCAGAATTTGTATTTTGTTTTTGGAAAATTATTTTTAATTTTTTTTTCTTTTTTACTGCCTTTTCTCAAATTTCTAATAATAATTTATAAACAATTGGCCAGGCACGGTGGCTCACACCTGTAATGCCAGCATTTTGGGAGGCCAAGGTGGGGGGGATCATCCGAGGTCAGGAGATCGAGACCAGCCTGGCCAACATAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGACGGGCATGGTGGCAGGCAGCTGTAATCTCAGCTACTCGGGAGGCTGAGGCAGGAGAACTGCTTGCACCCAGGAAGTGGAGGTTGCAGTGAGCCAAGATCATGCCACCTCACTCCAGCCTGGGCGACTGAGTGAAACTCTGTCTCAGAAAAAAAATAATAAAATAAAAAATAAAATAAATGTTTTTTGAATGTCAACTAGTTTGTTAAGCTCTGCATATATCATTACCACAGTGCTATGAGATAGGAGCTATTGTCATCTCTATTTTATAAAGAAAGATAATAAGACACAGAGAATTAAAATAACTTATCAACAGTAATGGAGCTTGTTGATGGCAGAACTAGGATTTAGACCTAGGTTTTTCAGCTTCAAAGCTACTCTCCTAATCAATAACTGTCATATACTTTATAAAAACAGTTAACAATATTAATATTTGCCATATTTGTTAAGCACTTTGTTTAATTTATGACATGAAAATTACTTGCCTTTGAGTATTTCCAGCAGTCTATTAAAGATACATTGATTAAAGGGCTGTCTAATGAACGTGCAAGGGTGGTTCTTAAGATGCCTTTGATGCCCCAGAGAATCTTGCAAACCAGTTTTCAGCCTTCTTTTTTTTTTTTTTCAGTAGCATTTCAAATCTTCTTTTGACTTTAGGAAATGATTATAAATTTTTTTCTAAGTTTTAATGAAGAGTAGTTGAAAATACCAGAATTTAATATACGTAATAGATGAGAGACTGTAGATCACTGATGTTAAAAATGATGAGGTGATAAATTTAAGCTGGAAGAAATCCAGAATCCTAAACAGGTTTCACTAGAAAAGCCAAACGCAAAGCCAGAGCTTTCAGTGGCATTAACATCTCATTTATTTATCTGCACAATAGTGTGCTAAAAAAAAACCCACAACACATTGGAAGAGCAAAAATGTTTCTCAAACATGGCCTTTGGAAAATACTTGCAAACCTCATGCTAACATGGAACTGGTAGTTCCTTAGCAGTATGTCAGGTTACAATCCATGATCCTGATTTCTTGAAATTTCTTTGATGTTGTATTTTGGATAGAGTTATATTAAGGAGTAAATCAGTATCAGCAATAATAATATCCTGCCAGGAGGCCAGGCAGCTAGACTGGAGCTGTGCTTGCTACAAAGTTATTTCTGGGCAGATTGTGAGAGCACTGTTTCTAGAAGGTTCACGTCAGTTGTATACTGTGTCTCAAATTGTATGATACTGTGTCTGTGTTTCTTTAGCCTTTTCTGGGATTTAGCTTGGAATGGCTAGAGAAAACAAGAAAAAAATTGGATTATTTTAGCAAACAAAGTCAGAGATGACTTAGGCTTTTAAGAGGGAAGAAAATTTACCTACAGACGAAGAGATTTTAATACACTGCATTAGCATTCACTGAAAGCTTTTCAAATCACGAAGGGATTATTCTGTCCTGTTTTTAAAATTTAAGCTACATGTCTTATAGGCATATGTTAGCTTACAGATAATACAATAAGACTTTTATTTTATAAATAAAAAACATTAAGTAGAAATAAGAAGAAATGTTCAGGTATAATATGTGTGGCCAGATCTAAGTCTGGCCTTTATATAATCATGAAACCTGACACATGATTTTATTGGTATGAATTGACTCAGAATCTCAAAAGTGTTAGGAATTTTTAAATAGAAAGAGAAAAAGGTGAGTGGAAAGAAAAGGGCACAGGCTATGGAGTGAGGCAGATCTGAGTTCGAATTTTAGTTTCATCAATTACAATGTGGAGAAGTTACTTGACCTCATTTTACAAATCAGGGTCACTGGGAAAAATAAATGATATATATCAGTGTCCAACAGTTAGAAAAAAGTATTATAATCTGTGAAAATAATATTCACTTTTATTATATGCTAGTTTTACATTTGTTGTCTATTAACAAAACAAAAAACTCCAATTGACTGGATTTGCCTTTGGTTGAACCTTTACAAATCTTGTGTTGTAGTTTTGTGTTTTAGGAGAAAATGAGATACTCAAACCCACCCTGTAAGGTATTATATTTTTGGTCAAAGCAGAACCAGTTCATGCCAGCCCCATAGCCTTTATATTTATTGAGTGGTAAATAAAAACTTGTGTTTAAAATGTTGATCTGGAAATGTTTCAAGATCCTGAATCATCCAAGTTTTATATACATATATATTTTTCTGATAAAAGGGAAAGTGCTACGATGTTATGATGTTTCTATCAGATTAAAATATATTTAAAAAAACTCAATTTAAGCATTAAATCATATTCAATGAGATTTTAGATTATTTTAGATTCTGCCTTACCCTGAATTCGATTTTTTAAAGGCAGCCAAATCCTCCTGACATCAAATGCCCAGTTTAACCTGAATTCTGTGGGGAACCTAAACCCTCACCAATAGGGAGAATTCCTAATTCAATTTGTTTAGACTGGGTTACTCACAGTTTAGAGACTTCCTATATAATTTCTGAAGAAGATCATAAAATATTGCTATGATATTGCTTATCTGTAATTATAACTACACCTTCCCCCATTA
Seq C2 exon
GGTACAACTTTGGCCAACCTGTGCAAGGGGAAACCCAAATCCGGGTGTGCAGAGAGTATTTTTCTTCAAGCAATTGTGAGAAAAATGAAAATGAAATATGTGAGCAATTTATTGCACAGGTACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214776:ENST00000518709:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains