HsaINT1037738 @ hg38
Intron Retention
Gene
ENSG00000214776 | RP11-726G1.1
Description
NA
Coordinates
chr12:9536199-9541343:+
Coord C1 exon
chr12:9536199-9536324
Coord A exon
chr12:9536325-9541188
Coord C2 exon
chr12:9541189-9541343
Length
4864 bp
Sequences
Splice sites
5' ss Seq
AGACCATGA
5' ss Score
-14.24
3' ss Seq
CATTTATATTGCTGTGGATGGTA
3' ss Score
-5.96
Exon sequences
Seq C1 exon
GGTACAACTTTGGCCAACCTGTGCAAGGGGAAACCCAAATCCGGGTGTGCAGAGAGTATTTTTCTTCAAGCAATTGTGAGAAAAATGAAAATGAAATATGTGAGCAATTTATTGCACAGGTACAGA
Seq A exon
CCATGATCTTTACTCCAAAAAAAGTTCTCACTCATTTTTCATTCTTATTCTTTCTTTGATTTCATTTATAAGGGGAACTTAACAATACTATTTTCATTTTATTGATAATGGAGTTTGCAGCTAAATAAAGTGAAGAAAGAGAAGAAAATACAGTGCTTAAAGCAGTTTTTTATTCCATAGACCATGTAAATTGTTCTCCACCTATAGATTCATGGGATTTTTAGAATATGAAAGGTATCGTGGGCTTTGTTGTTTTGTATATCGCCTAGGTGGCCTTCCTGATTTTTCTTTGGAGAATCGTTAATCATCCTTTAAATGAGTCTGTGATATTACTCTCCATGCCACCTGGATTTTTTTTTAGTGGAAACAGCTTACTTGCAATCAACTGCAATTCAGAGTACCCCCACTATATTACTTTAGACTTGCAGTTCATATGTGAAGTCATCATTTGCTCTATCTGCAGCATCCTAACCTTAAGTGAACAACTCTTCCTATCTCTTTGAAATTGTCTTTTGACTCCCCAAAGTGAAGCTTGTGTACGCCACATAGTTCATATTTTAAGTCCAATTGTCCTAAAGTTACTCATCAAATTTAGTGAACATCCTCTAGGTAAATATCAATAATTGACAAAGACAAGCAGAATCCTACCTTTACATAGGAAATGCAGGCAAAGAAAACTAGGGTGGAATTTCTCCATGTCAGCAGTACATTCTGATAGAGTTCAGTCAACTGTTTTACACAATGATGGGTGTTCCCTCAGCAAATGGTTTATTTTTTTCCCCCATGTGAAAAAAATACCCATAAACAATCTGGTAGAGGCTAGGAGCAGTGGCTCACACCTCTAATCTGAGCATGTTGGAAGGCCGAGGCGGGAGGATCATTTGACTCCAGGAGATCGAAACCAGCCTGGGCAACATAGTGAGCCCCTTCTCTACAAAAATTAGCCAGGCACAGTGGTGCACATCTGTGGTTCCAGCTACAGGGAGGCTGAGGCAAGAGAATCACTGGAGCCCAGGAGGTCAAGGCTGCAGTGAATTGTGTTCGCACCACTGTACTCAAGGCTGGGCAACAGAGCAAGACCTGCCTCAGAAAAAGAAAAAAAAAAAAAATCTGTCCGGTGGAACTATCTTTATATATGAGAGGCTTTATTTACTTGAAATAAATTTCTTAGAGTGAGTTTCCTGAGTCAAAGGAAATATAGATAATGTTCATAGACAGATAATTTTAATTTTAATAAATATTAGCATATTGCTCTCCTAAAAGTTTTTAGGCATTCAAATTCCTGTCAGAAGTACATGAGAATACTATATTTTCCAAATTACTTTCAGCAATATATTTAGAAGTTTTAAAAGTTTTTGTCATTTTGATAGACACAAATTTAGCTTGTTTTAACTTGTGCTATCTAATTTCTATTTAGTTTGAGCAACTTTTCATATTTTTGTTATCAATTTGGATTTGAGAACTCTTAATTACCCATGTTTTTCTGTTCATGTGAAATGGAAACTTTCATTGTAAGTACTGCCTTCCATCCTCCAAGCATTTTTTTTTTAAGCCCATTATTTAAATAGGCAACTCATTTACTTTGTCATATTTTTGACATACCCACCTTCCTTATGTTCCTGGGTTTCCAGCCTTAGAAAAAAAATCTCACTGGCCCCTGTGTTGTACATGTGGCTATCTAAGTATGCTCTTAAGATCGTTTACAATTTTCTAATAGACAAAAAGTTCACTTCCAATGATGTTCTAAAATGGGAATTTTTCTTCCAGATGTGGGCTGTGTTGTGTTAGCACCTATCTCACAATTTTGTTCTCTCTCACTCTTTGTCCTAAATCATGCCCACGAAAGTTTCGTCTATGTTATTGGTTCTTATTTTTACTATTTTCTTTCTTATATTATTTTGTGTTCCTAAATAATTTATTTTCTCTTTCATCTTATTAATTCTTTTTTCTAATATTTGTAGTTGATTTTGTTGGGGTTTAAAAAATATATTAGCTGTTTCTTTTAGTAATAAGCACATTCAGTGTTTTACATTTCTTCTTAACTACAGCTGAAAACCGTTGACTTTGATGCAAAGCATTTTTTCATTACTCTAATATCTGGATTCTTATTGGTTTACTTTATGTATTCTCTTTGTTTCAAGGATTCCTGAAAAAAGGCTTTTCTCTTATTTTCGAAATAATTAAGGTTCTTCTGATCACTTTCTATGATTTCATTTTAATTTGACTATATTATCATTAGACAAAGTAAAATTGCTTTTGTTGTTGATGTAATAGCTGTTAATTTAAGATTGAGAAGCACATACTCTGCAGCCAGAGCAGCTCCTCAGCACCACCGTCTCTTAGCTGTGAGATCTTGGACAGGCTACATGATGGACCTATTTTAGTTTCTTCATCTATATAGTAAGATAATAACAGTACCTAGCTCATGTAATAGTTTTGAGTATCAAATAAACTGATATATCCTTATAACATTTTAAATCTGGAATAAACACTGTGTTGTAAAATATAACTAAATTTATATTTCTCTGATTATTGACATTACTGATGATAGATTAACTATAGATTTTTTTTGTTATTTTAAATAAGCAATATACCTTAAAAAGTGTTTGTTTTGTTGTTACACATGTGCTGAGCGCTTCTGTTCCATCTGTTTTAGTGCCTTTCTAGATGATTAGAATTTCTTCCTCTTAAAACACTGTGAACCAAAAGTATCTGAGACAGATGTCAATCAATTTGCAAAGCTTATGTTGCCAAGGTGAAGGATGTACCTATGACAGCCTCCAGAGGTCCTACCAACATGTGCCCAAGGTGGTTGGGGTACAGCTTGCTTTTATACATTTCAGGGAGATGTGAGACATCAACAAATATGTGTAAGATGTACATTGGTTCGGTCCAGAAAGGCAGGACAATCCAAACTAAGGGGGTTTCCAGGTCATAGGTAGATAAGAGACAAACAGTTGCATAAAGAAGAAGTCTTTGAGGCCGGGTGCAGTGATTCACAGCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACGTGAGGTCAGGAGATTGAGACCAGCCTGACCAACATGGAGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCAGGTGTCTGTAATCCCAGCTACTCGAGAGACTGTTGCAGGAGAATCGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGTCAAGATTGGGCTATTTCACCCCAGCCCGAGTGACAGAGCAAGACTCTATCTCAAAAAAAAAAAAAAAGAATAAGTCTTTGTCTTTGATCAGCCTTTCACTGAATACACAAATTACATGTGAGAGGAGGATAGAGGAATAGTCACTTATGCCTTAGTGTGGCTCAGTAAATCTGCATTTTTACATAAACTATTAGGCAGAGGAAGCAATCAGATAAATCAGATACATATTTGTCTCAGGTAAGCAGAGGGATGACTGAGTCTGTCTTTTGTCCCACGCCTGTAAAGATAAGCTATGAATTTATATTGCCAGGGTGAATTTCCAAAGAACTGTTTTAAGGAAAAGTTCTTCAGGCCCACAAAGAATTTCCTTGTGGGCAAATTGTGAGGGAGGTATGTAGTTTTTATCTTTGTAGCTACCTTATTTGGGAATAAAATGGGAGACAGATTTGCCCAGCTGTTCCCAGCTTGCCCTTTCCCTTTAGCTTAGGGATGTTGGGCTCCTGAGATTTACTTTCCTTTCACAATACCATTCAGCTTCATTTCCATCCTTTAATCTTTTCTCATCTACAATGTTTCCAGGAGAATTTCCTTGAAATCTGTAAAATACAGATTACCTCCTTCCCTTATTTAAAATGCTGATGTAAATATTCGCCTCCTCCTACTCCTCCTTTAATTCTTTGGCCATTTCAACAAGTTTATGAGGTAGAGCCGTGGCACGGGGTGGGGATGTTAATATATTTGTGCAAAAACCATATTTTAAAAGACACTTAAAAAAACCTCTTGGATCGCTAACATTTTAATTATACCTTCTCTTTATTTTTCAGTTGGAAAATGGTTGTGTTTCTCAAATTGTAAATACAAAAGTCTTCCAACTCTACCGTTCGGGATTGTTCATGACATTTCATGTCGCTGTAATTGTTACAGAATCTGGGACAGGTAATTACTGTATTTTTTGGACGACCTGGGGATATATGTATGGCAACTTACTGGGAGAAGCTTGTTGAGTTAGCACTAAGTACAAAATTCAGATTATTTCTAATTTAATACAACTGGGAATAGTTGCAAGTGCAAAAATTATTACTGAAAAATTTACAAGATTGCACAAAGTGAGTGTTCAATAAGTATTTGTTAAAAGAATGAAAGAAGAGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCAGGAGTTCAAAATCAGCCTGGCCAGCATGGTGAAACCCTGTCTCTACAAAAATACAAAAAATTAGCCGGGCATGATGGTGAATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCTGAGATCGCACTATTGCACTCCAGCCTCCAGCCTGGGTGACACACCAAGACTCAGTCTCAAAAAAAAAAAAAAAAAAAAAAACCAGAAAGAAGGGAGAAAGAGATTAATTATTTAATTTGGAGTGGGAAAATCAGATTTAACTACTAATTATTTCTTGTTATTTATAAAGGAGTTTGTGATGATGCCATTGTAAAGTGCTCTATATAAGCATACTTGATCAATATCATGATGCTATTCACTCTGGGCAAGCTGGTCACATTTATATTGCTGTGGATG
Seq C2 exon
GTAACTTAGACATTTTCACTCTGCTGTGTTCATCATTCCTTACAGTTATGCAGATCAGCGAGAAGACCTCAGTTTTTATCACTCAATTGCTTGGAACTGTAAACTTTGAGAACATGGATACATTCTATAGAAGAGGGATTTCTTATTTTGGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214776:ENST00000518709:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains