HsaINT1037739 @ hg38
Intron Retention
Gene
ENSG00000214776 | RP11-726G1.1
Description
NA
Coordinates
chr12:9541685-9542762:+
Coord C1 exon
chr12:9541685-9541864
Coord A exon
chr12:9541865-9542555
Coord C2 exon
chr12:9542556-9542762
Length
691 bp
Sequences
Splice sites
5' ss Seq
GAAGAAGAC
5' ss Score
-11.38
3' ss Seq
CCACATATGTTCGACCTGAGAGC
3' ss Score
-8.38
Exon sequences
Seq C1 exon
CTTAAATTTTCGGATCCCAATAATGTACCTATGGTGAACAAGTTGTTGCAACTGGAGCTCAATGATGAATTTATAGGAAATTACACTACGGATGAGAATGGCGAAGCTCAATTTTCCATTGACACTTCAGACATATTTGATCCAGAGTTCAACCTAAAAGTAAGACATCAAAGAACAGAA
Seq A exon
GAAGACCATTAGACATCCCACAGAGGATTTGGATATCAGAAATGTTAAACATTAGGAATATCTCAAAAGATAGCTTGTATACAGAATATATTTTAAAGAAAATTTAAAATGTAACTTATTTTATAAATTTGCTTGTTCACTAAATAATACATGAGAATACTTGTTCAAGAGGATGGGAAGCTAAAAGTCTATCACGATTGTTATAAATTTGCTAACAACTAATATTTTCCTTTAGGAAACAAGAAGTAGCTCATGAGGATGATTTGACTTTCTTCCTCAGATCATTTCATGCATAGATAGGGGAGATCCTATACTTTCTGTTTATTTTCTGCTGCTTAAACAGAATTTTGCAGTTAAATAATTTGTCAGTGTTCACATGTAGCTGAAAGAAACAGAACTGAAACCCAATTCTGTGGCTTCAATTAAAGTGTAAAAAACATAACAATTCACCATCAGTCTAATGAAATATTTACACAGTCTTTCATGGTCACGTTTTGTATACAAAGAGCAGGTGCTATTATTATTTTGATTCCAATAACTTAACATTAAAACGTCAGCCACAAGCTGAGATTCCTCCCTACTCTGGAGAGTTGAGAAGCCTCCATTCTCAGTAACAACTGTCTTCGGATGTCATGATACTAAGACCCTTCACTTTCTTTTGTCATCTCAGGCCACATATGTTCGACCTGAG
Seq C2 exon
AGCTGCTATCTTCCCAGCTGGTTGACGCCTCAGTACTTGGATGCTCACTTCTTAGTCTCACGCTTTTACTCCCGAACCAACAGCTTCCTGAAGATTGTTCCAGAACCAAAGCAGCTTGAATGTAATCAACAGAAGGTTGTTACTGTGCATTACTCCCTAAACAGTGAAGCATATGAGGATGATTCCAATGTAAAGTTCTTCTATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214776:ENST00000518709:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF077039=A2M_N_2=PU(30.7=56.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTATGGTGAACAAGTTGTTGCA
R:
TTGGAATCATCCTCATATGCTTCACT
Band lengths:
342-1033
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains