HsaINT1038448 @ hg38
Intron Retention
Gene
ENSG00000258525 | RP11-829H16.3
Description
NA
Coordinates
chr14:30889143-30889808:-
Coord C1 exon
chr14:30889384-30889808
Coord A exon
chr14:30889256-30889383
Coord C2 exon
chr14:30889143-30889255
Length
128 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TCTTTTTTAAAATCCTACAGTAA
3' ss Score
6.42
Exon sequences
Seq C1 exon
TTGTCAAAATGTTACCATTATTGCTGGGATTCTAAGAAATCTCTACAAATGCCTCTGATGACATCAGAAACAATTGGTTCTAATCCTGTGAACTCTCTTGTGAAGAAAGCATGAGACTCCTTCGGTTTAGAAGCCATATCTTTCAGGTCATCCAGAGGTGCCCAAGCCACACCAACAGAGAAGATAGTGATTCCTACAATGAAAACATTTTAAAGTGAATTGAAAATCAGGTCTAGCTAATATATGGAATTATGTCTATATGTTTTCCATACACTGTTACATAGTTGCAGCGAAAACTGCTTACTAATTTCTGGACAATTAAATCCCCTGAACAAATTAAGTTTTCACAGTCATTGTGACGAGAGTGGCAAAAGAGTGGTCCAAACCAGAAACTCTGCTATATCTGTAATTCGCCACATTAACAG
Seq A exon
GTAAGTCATCACTGATAAGAAATAATTTGATAAAGTTCAATATCCATTAATGACAGAACACACCTATAAACTAGGAATAGAAGAAGACTTTTAACCTGATCCACAGTATCTTTTTTAAAATCCTACAG
Seq C2 exon
TAAATGCGGATGGTGAAAATTTTCCGTATGAGGTTGGCCTGCATCAAACAGTATACTGGAGTCAGAGTCACAATCCATTAAAGCAAGGAAGAATGGCACAAGAGATGGGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000258525:ENST00000555108:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGTTACATAGTTGCAGCGA
R:
TCTTGTGCCATTCTTCCTTGCT
Band lengths:
258-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains