HsaINT1040880 @ hg38
Intron Retention
Gene
ENSG00000186193 | SAPCD2
Description
suppressor APC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28055]
Coordinates
chr9:137062124-137064979:-
Coord C1 exon
chr9:137064863-137064979
Coord A exon
chr9:137064788-137064862
Coord C2 exon
chr9:137062124-137064787
Length
75 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CCAACTGTGCACCTGCCCAGGAG
3' ss Score
3.79
Exon sequences
Seq C1 exon
GCCCTGCCCCCGTCCTCCTCCGGGCCCCCCTGCCCTGCCCTGACGTCCACCTCACCCCCGGTCTGGCAGCAGCAGACCATCCTCATGCTGAAGGAGCAGAACCGACTCCTCACCCAG
Seq A exon
GTAGGGCAGGCGCGGGAGGGGTGCAGGGGTGGGGGTGAGGCCCCGCAGGCCTTGACCAACTGTGCACCTGCCCAG
Seq C2 exon
GAGGTGACCGAGAAGAGTGAGCGCATCACGCAGCTGGAGCAGGAGAAGTCGGCGCTCATTAAGCAGCTGTTTGAGGCCCGCGCCCTGAGCCAGCAGGACGGGGGACCTCTGGATTCCACCTTCATCTAGTCCTTGTGGGCCGCGTGGGCCCCCAGGGCCAGCCTGGCACTCAGCCCTTCGAGGGTGGGCGCCCCATCGCACCCACCCTCTCTGGCTGGAGACCCCCGGCAGGCCCAGGCACAGTCCCGGAGTGGGCGCCTTCCTGCCGCCCTTGCCAGATGGGCTCCCCAGGCCTGCCCCCGGCTGGTCCCCGCACCGAGCGCTTGACTCCGTTTTGGCTCCTGGTGCTGACATGGGCTGGGGCTCTCTTGAGTCCGCATAGTCCGCAGCTACTACTGCCGCTGTCAGTGGACAGTGGGGTACCCCTCCATGAGTTAGCGTCCCCCCGTTTCCAGCGGTGCCGCCCTGGGTCCCATCTTCAGGGAAAGGCACTGCCCACGCCAGGCTGCACTTCCAACAACGGGCAGCAGAGGGCGCGGGGCGGCTCCGACGCGGGTCCAAGGGCAGCTTCCCGCTCAACCAGGGCACCAGGACGAGGTGGCTGTAGCTCGGACGGACGGAAGTAGATGGAGGGGGTGGGGACGGCCTGTAAGCGGGGGGTGCCTGCCTGGCTGGGGAGCCCCAGGGATAGCGGTCGGACTTCAGGTTCTGGCCAAGGCTGAGGGACCCTGGCTGCAGCGGATCGGCACGCCGGGTGGGCGAGAGCTTGGCCTGCATGTGCCTCCCACAGACCCTGGGGTGATGGCCTTCCCCCTCTTGGCCGGGACGTTGCCCCACGTTGAGTCCCACACAACATCCTGTGAGCCTGGCTCCCCAGGAGGGCCCCCAGACAGCTCCCAGGCACGTCATAGGCAAAGCCTGTTCCCCCGACTCAGGATTTCCAAGGCCTGGGGTCCTGCTCACCCCCCTTTGCTCTCACGCCCAGCCTGTCCCCAGGTTTCAGCTGGGAGAGGCCACCTCCCTCAGCCAAGGAAAACGAGAACCCCCAGGGTACAGGAGGAGGCTGGGGCAGGTCCCCTTGGGTGTCACTCCCTCAGCCCCTGCCCAGGCCCACTCCCGCTGGTGCTGGAGTACGCACTGGTGGGGGGGCCCTGCTCAGCCCAACCTGGAGGGTCCCAGTGTCACCAGAACCAGGGGCACGGCAACAGCATCGATGGGTTCTGCAGCCCAGGGCCCCCGATGCGGGGTCAGTGCGTGGGGGGCGCAGGGCCCCCGATGCCGATGCGGGGTCAGTGTGTGTGGGGCGCAGGGCCTCCGATGCGGGGTCAGTGCGTGGGGGGCGCAGGGCCCCCTCGTGTCCAGGGCACTTTGGTACACTGTCCCACAAGGCACCTGTCTCAGAGGAGGGGCCCTGGCAGGCAGCGTGGCAACTCCCTTCCGGAGCCCAGCTCCATGCTAACCTGCCCACAGCAACCCCACAGAGCCACATTCCCTGCTGCACCTGGTCTGCAGGGGTGTCCCAGGACAGGCCCAAGTCAGCCCAGCATGCAGCTGCCCTCCTACCCTGAAGATGGGAGTGGGCTTTCCAGGGGACATAAGGATGTCAGGCCTGGACCTCCTGGGCAGGAAAGGGTGCAGGTCCTGAGGGCCTGTGCCCCACAGCCCCAGCACCAGGTGGACTGCAGCGCAGTGGGTGGGCCAGTGGCAGCCAGGGAGAAGCCCCCCGTCAGCAGGCTGGGGTCTGCCCACCAGGGCCTCCCCACGTCTGCCTTTGAGGGTGCCTGCCATGCCCTGGGGGATCCTGGCATCTTTACTGGACTGGAAGCAGGAGACAGAACAGTGTCTGTCCCGGGGTGACTTCATCAGGAGACCGCCCACATAGAGCTGGACCCCGCAGCTGAAGCGGAAATGTGAGACAGGCTGGCACCTCCGGAAAAACTGCCTTTCAGCCTTGGTGTTCCGTGCAAGGTGAAAAGAAATAGGTCCTCCCAGTTTACAGCTTGAAATCAGGCTAGTGAGTGGCCCTGGAGACCACGAGGGGAGAATTTAAAGGCCCCGGCTGGCAGGGTCTAGGTGGCTGGCAGAGGCACATGCAGACCCTGCCTGGAGCCTGCCCTAGGACGCTGGGCGGGTCAGTCTCCGTGCAGGATGTGAGCAGCGTCCCTGGGCTCTATCCGCGAGGTGCCAGTAGCGTGTGCAGGTACATACACGTGCGTGCACACTGTGATGACACCCGGAAATGTCTCAGGATGTTGAAATGTGTCCTTGGGGGCAGAAGTGTCCCCAGTTGAGAATCTGCCCCAGAGGAACACACCCACACCAGGCCTCAGGATTTTGTGTTGATCAAGTTCCAAGGAAAAGGAACATCTCAGCCGGGCGTGGTGGTTCACGCCTGGAATCCCAGCACTTGAGGCCAGGAGTTCCAGAGCAGCCTGGGCAACGCAGTGAGAGACCCCATCTCTACAAAAAAAAAAAAGAAAGAAAGAAAATGAGAGATCCAGGTTTAAAAATTCATAAACACCACAAGGAAACAATACACTATGAGACCCAGCAGAAGCAACAGATTGACTCTAGACCCAGATACTAGAATTATCAGAGAGAATATAAAGTAACAGTGTTTTATATATCTAAAGAAATAAAAGAGATTTCTGGAAACATGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186193:ENST00000409687:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.513 A=NA C2=0.310
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGACCATCCTCATGCTG
R:
AAGGTGGAATCCAGAGGTCCC
Band lengths:
170-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains