HsaINT1042110 @ hg38
Intron Retention
Gene
ENSG00000188687 | SLC4A5
Description
solute carrier family 4 member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr2:74342458-74343409:-
Coord C1 exon
chr2:74343356-74343409
Coord A exon
chr2:74342535-74343355
Coord C2 exon
chr2:74342458-74342534
Length
821 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
TTTACCCTCCCTCCAAGCAGGCA
3' ss Score
8.84
Exon sequences
Seq C1 exon
CCACCCTAAAGGAATTGGAGTCAGGGCCCAGGAGCCACAGGCCACTGCACTGGG
Seq A exon
GTAAGTAGAGTGGATTTTACATAAATAAAGTTACAGAGTGGTTGTAGGTTCTGGTTTGGAGATGTGAGTGAACCAACTGAATAGAATAGGCAGATTCCCCAGCCCACCAAGAGTCAGATGAGAATTTTATTGCTTTTTGCTAAAGGCCTGTACAAGACTTAGAGCAAAGATAAGGAGTAACCTGATTGTTGAAACTAATCTATAAGTATTCCAACATAGCAAAGGACAAGTAACGGAATGACGAGGTTTTCCTGTAGTAGTGTTGCGATTTTGTTCTGCTGTGTCCCCCTACTCCAGTTTCCTCTGTGAGGGGAGCGTGTAGTGTGTGCATATCTGTGGAATGTCAGACTTCTAAAGTCAGGGGCTGAGACCTATATCTAGTTAGACCTCTGTGCATATTCTTGAGCCATGGGAGTCTCAGTGGTTGATAGTACTTCACACTTCTTCCAGTTCAATAAGGGTTACCTATGGTGTCTCCTCTGAGTCTCCTAGGAGTCCAGAAAACATGAGACTTGTATAAGAATCCACACTTCAACTAAGCTTTCTGGCCCAAAGAAGGCATTGTTACCAAGGATCTGTTTCTTGAGGTCTTTAGGGAGTGAGAGGGAAGGAACGCATGAGGAACCAGAGCTAGTCCCCATCTCTCTCCCTAGAAGTGACAGACTGCATAGCTCTTATGTATCAGGAGTCCTGGAGATCAGCTGGCTTTCCTTAAAAAAGGGTCATCCAGCCGTGATGAAATCCTGACTTAGAAACCCAGTGCCCTTAGCTTTGTGGGCTTCTGTCCCTGAGAAATGGTGTTTTACCCTCCCTCCAAGCAG
Seq C2 exon
GCATCCCAGGATTTGGAATTCAGCTGTGAGCTCATGAGCTGATGGATGTTTCCAGGAGTACCCTGAAGACCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188687:ENST00000377634:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains