HsaINT1042558 @ hg38
Intron Retention
Gene
ENSG00000233016 | SNHG7
Description
small nucleolar RNA host gene 7 [Source:HGNC Symbol;Acc:HGNC:28254]
Coordinates
chr9:136727046-136728184:-
Coord C1 exon
chr9:136727881-136728184
Coord A exon
chr9:136727087-136727880
Coord C2 exon
chr9:136727046-136727086
Length
794 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
CGGTTTCTTTTTTTCTCTAGGAC
3' ss Score
12.04
Exon sequences
Seq C1 exon
CTCTGCGTGCGCCGGAGGCTGCCGTGGCGGGTGGGCCGCCTGACTTCTCCTCCCGGCCAGTTCTCGAGCGCCTCACCGGGCCTCGCCCTGCAGCCTCGCTCTCGCTGGCGCTGCGCGGCCTAGGGGACTGGGCTGCTGGCCTCCGGGTGCGGGGTGGGGGCAGGCTCCGACCTGGGGCGTCCTGGCCGCGCGAGCCGCGGGATGGGGGCCCGGGCCGCGGAGGAGGCGCCGCTGGTGTGTCCCTTGGTGGAGAGGGCGCTGCCGGCCCTGCGCGGTTTCCAGCCAGGAAGCTTCGGGAAGCCTG
Seq A exon
GTGAGAGCTGAGTGCGCGAATTCGGATCTTAGAGAAAGGCACCCCGTTCACCCACGACCCTTCCGCTCCTGCCGCTGCTTCCCTGAGTCGCTCAGGCTGTGGGAAGATGTTTGTCGGCATCTTTGAAAAATTGATTTCTTATGCTGCGTCAGGTGGTTTCCTTGTCACTGTGGCTGCTCAGCGGGAGGCTGTTCTGGCGGGAGGAGGACTGCTCGGTTGTCTGGTGGGCATTCCGCCTCGTGGTCCTGGTCCCTTGATACCTGCAGGGGATCAGCAGCCCGCGTTTCGTGGCCACTGTGTTGTAACTCCAACTTCCCCTCCCGCAAATTAAGCGTAGAGTAAGGGGAGAGAGTAACATGGGTCGGATTTTTCTAGAACGGCCCTTGTGACAGTGAGCTTTTTGGTGGCAGGGAGCTTCTTTGGTCCGCCTTCCTGGAGACCAGATGCAGCAAAACGCAGTCTTTTTCTTTTCGAGACAGAGTCTCAGTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTCAGCTCACTACCACCTCTGCCTCCTGGGTTCAAGCGACTTTCCTGCTTCAGCCTCCAGAGTAGCTGGGATTACAGGCGCCAGCCACTAGGCCAGCTAACTTTTTTTTTTTTTTTTTTTAGAGAGACGGGTTTCACCGTGTTGGCCAGGCTGGTTTTGAACTCCTGACCTCAAGTGATCTGCCCGCCTCGGCCTCCCAAAAAACGCAGTGTTTATGTGATGCTCCTCTGTGGTGTTTGCAAGATTTATACAAAATTGCGGTTTCTTTTTTTCTCTAG
Seq C2 exon
GACGTCTGCTCACTGGAGATGACACGTGCGTGGGGTGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000233016:ENST00000414282:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCCTGACTTCTCCTCC
R:
CAACACCCCACGCACGTG
Band lengths:
310-1104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains