HsaINT1042691 @ hg38
Intron Retention
Gene
ENSG00000172845 | SP3
Description
Sp3 transcription factor [Source:HGNC Symbol;Acc:HGNC:11208]
Coordinates
chr2:173963761-173964553:-
Coord C1 exon
chr2:173964405-173964553
Coord A exon
chr2:173963884-173964404
Coord C2 exon
chr2:173963761-173963883
Length
521 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AACCCGCCCATTGGGGGTAGGAC
3' ss Score
3.31
Exon sequences
Seq C1 exon
CTCCCGAAAAGCCCGTGAAACAAGAGGAAATGGCTGCCTTGGACGTGGATAGCGGCGGCGGCGGTGGCGGCGGCGGCGGCCACGGCGAGTATCTGCAGCAGCAGCAACAGCACGGAAACGGTGCGGTGGCGGCGGCAGCGGCGGCCCAG
Seq A exon
GTGAGGAGCGGCTGAACCCCGGCCCGGCTCCCCCCTCGCGCCGCTTTCTCCTCCCCTCGCCTCTCCCCTCCCTCCTCGCCTCACCCCTCCCTCCTCGTCTCTCCCCTCCCCTCCACTCCCCTCCCCCCGCCCCGGGAGCTGCCCGCCCGAGGCGCCAACGCTCCGACCCCGCCCGCGCCGCCCCGCCTCGCCCGCCTGCCGCCTTTTTGTGCGCGTGTGAGTGTGGGCCCCAGCGTGCCCTCCCGGGGGTGGGTTCCGGGCGGAAGGCGGAGGCCCGGCGCGCAGCCCGCCGCCCGCCTGCCCGCGGACCGGGGAGCCGGGGTGCTTGGAGCGGGGGACGCCAGGCGTGGGCTGGCGGCGGGACCAGGAGGAGGAGGAGGAGGAGGAGGAGAGCGCGGGCTGGCGCTTGCCCGGGCGCAGTCGGCGGGGACCGAGTCGTACTTCCTGTGCGAAAGGCGGCCCGACCCTAACCGCCACCCCCTCCCCCTGTCTCCCTCTCTGAACCCGCCCATTGGGGGTAG
Seq C2 exon
GACACTCAGCCGTCACCGCTCGCTCTGCTGGCCGCTACCTGCAGCAAGATAGGGCCGCCATCGCCGGGCGACGACGAGGAGGAGGCGGCCGCCGCAGCCGGGGCCCCCGCCGCCGCCGGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172845:ENST00000310015:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.994 A=NA C2=0.929
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAAAAGCCCGTGAAACAAG
R:
CTCCTCCTCGTCGTCGCC
Band lengths:
230-751
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains