HsaINT1043191 @ hg38
Intron Retention
Gene
ENSG00000204344 | STK19
Description
serine/threonine kinase 19 [Source:HGNC Symbol;Acc:HGNC:11398]
Coordinates
chr6:31971831-31972511:+
Coord C1 exon
chr6:31971831-31972216
Coord A exon
chr6:31972217-31972301
Coord C2 exon
chr6:31972302-31972511
Length
85 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
TTCGTCATCACCTGGTCTAGGAG
3' ss Score
4.23
Exon sequences
Seq C1 exon
CTGCCTCTTTCCTTGCCCTTCACCCACCCTCCCTCCAGGTCCTCCAAATGCAGTGAGGTTAGGAAGGACGTCTGCGCTCAGATCAAGAATCCAGTTACCTCAAAGCTCCCCAACTTCCACCTCCGCAGAGCTATGACGTCATGGCAGGCACGCCAGAGGCCGAAGGATGCAAAAGTGGTTTTCTGCTTTCGATGATGCAATCATTCAGCGACAGTGGCGGGCAAACCCCTCCCGGGGCGGGGGAGGTGTGAGCTTCACGAAGGAGGTTGACACCAACGTGGCCACCGGCGCCCCTCCACGCCGCCAACGAGTCCCCGGGCGTGCGTGCCCTTGGAGGGAGCCAATCCGCGGCCGGCGTGGGGCCCGGCCTGGCGGAGGTGATGCTG
Seq A exon
GTATGTGCGTCGCCACCGCCCCTCCCAGCACTGACGGGCCTGAGGGACGACAAGTTGACGCTCCTTTCGTCATCACCTGGTCTAG
Seq C2 exon
GAGGGACGCCCGGGGAGACCGTACGTCACTGCTCTGCGCCGGAAGACCCTATTTTCAGGTTCTCTTCCCTCCATTCCTACCCCTTCCCCGGTACCATAAAATCCCGGGATATGAGCTGGAAGAGGCATCACCTGATCCCGGAGACCTTTGGAGTTAAGAGGCGGCGGAAGCGAGGGCCTGTGGAGTCGGATCCTCTTCGGGGTGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204344:ENST00000375331:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.811 A=NA C2=0.571
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF104944=Stk19=PU(0.5=1.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCACGAAGGAGGTTGACA
R:
AGAGCAGTGACGTACGGTCTC
Band lengths:
170-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains