HsaINT1043432 @ hg38
Intron Retention
Gene
ENSG00000099994 | SUSD2
Description
sushi domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30667]
Coordinates
chr22:24183057-24183646:+
Coord C1 exon
chr22:24183057-24183267
Coord A exon
chr22:24183268-24183494
Coord C2 exon
chr22:24183495-24183646
Length
227 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
3' ss Seq
CACCACCACCACGCCCACAGGTT
3' ss Score
5.54
Exon sequences
Seq C1 exon
ATGCCCAAGAGAGCTGCTCCATGCGCTGTGGCGCCCTGGACGGGCCATGTTCCTGCCACCCGACGTGCTCTGGCCTTGGCACCTGCTGCTTGGATTTCCGGGACTTCTGCCTGGAGATATTGCCCTACTCAGGATCCATGATGGGCGGCAAGGACTTTGTGGTGCGGCACTTCAAGATGTCCAGCCCCACAGACGCCAGTGTGATCTGCAG
Seq A exon
GTTGGGAGGCCCAGGAGGCCGGGCACTGGGGCCCCACGCCCCCATCCCTGTGCATGCTGAGGGCTCAGACCCACTGACTGGCTGAGTGGAGCCCCTCGGACCCAGGACAGGCAGGAGGGCACAGGGACAGCTGGCTGGTTGGGTTCCCCAGGGAGGTTGGGGGCCCAGACCATCGAGAGGCTCAGCCTGCAATGACCCAGCCCCTCCCACCACCACCACGCCCACAG
Seq C2 exon
GTTTAAGGACAGCATCCAGACCCTCGGCCATGTGGACTCCTCCGGGCAAGTGCACTGTGTGTCACCTCTGCTCTATGAGAGCGGCCGCATCCCCTTCACTGTGTCACTGGACAACGGCCACTCCTTCCCTCGTGCGGGCACCTGGCTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099994:ENST00000358321:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0103312=Somatomedin_B=WD(100=56.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAGAGCTGCTCCATGC
R:
GATGCGGCCGCTCTCATAGA
Band lengths:
298-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains