HsaINT1043734 @ hg38
Intron Retention
Gene
ENSG00000266733 | TBC1D29
Description
TBC1 domain family member 29 [Source:HGNC Symbol;Acc:HGNC:24509]
Coordinates
chr17:30560117-30560716:+
Coord C1 exon
chr17:30560117-30560182
Coord A exon
chr17:30560183-30560616
Coord C2 exon
chr17:30560617-30560716
Length
434 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
CATGCCTACTTTCCCCACAGATC
3' ss Score
12.98
Exon sequences
Seq C1 exon
GACAAGGAAGGTCTATGCACACAGGGTTCCTCATTCAGCTGGCTTCTCCGGGTGCTGAATGATGGG
Seq A exon
GTAAGGAGGCACAGGGAGACCCTGGCTCAGGGACCCTCCTTGCCCTGCAGTGCCCTGCTTCCCCAGCCAGGGGGTCCAGCTCACCCCAGTCCACAGGAGGCTCAGGCAGATCCCCAAAGGACACACAAGCAAGACCCTCTGCCCAAGAGGGCTCATCCCAGTGCAGAGGACAGGGCTCAGGACCAGCCTCATGGACAGACTGGGCCAGGACCCAACTAGGGAGGGCTCAGGGGAGCCTCAAGCCCTGGGCAAGCCCCTCTCTGCACTGAAATGAGTGCCCCCCCATAAGGAGCTGCAAGACCTTGTCTGACCCAGCCTCCTGGAGGGGTCGGGTGACCCTCATGGGGAAGGTCAGTGAAGCCCCAATGGGCTAGCTCGAGCCACCAGCCCCAGCCTGGAAGGGCCAGGTCCTCCCATGCCTACTTTCCCCACAG
Seq C2 exon
ATCTCTCTCGGGCTCACCCCGTGCCTGTGGGATATGTATTTGCTGGAAGGGGAACAGATGTTGATGCTGATAACAAGCATTGCCTTTAAGGTTCAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000266733:ENST00000579181:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(33.9=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(53.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains