HsaINT1044253 @ hg38
Intron Retention
Gene
ENSG00000146426 | TIAM2
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr6:155251945-155253053:+
Coord C1 exon
chr6:155251945-155252003
Coord A exon
chr6:155252004-155252947
Coord C2 exon
chr6:155252948-155253053
Length
944 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
GGTGGGCCTTCATGTTACAGCCC
3' ss Score
6.86
Exon sequences
Seq C1 exon
TTTTTAAGAGAGCCGTCATACTGGTTTATAAAGAAAACTGCAAACTGAAAAAGAAATTG
Seq A exon
GTAAGGCAAAAATTCATTTTAATTTAAGCTACCTTTTCATAGCTGTATCTTCCTATTAACGTTGAACTGAAAAGCCCACTGAGCACCAAGGCTGGGCTGACTGATACTGCTTACTCTGAGGGTAACTAACCCCATCACATACTGAGAGCGTTTCTGAGTCTCCCCATGAAAGATGTCTGTTTTAAAAGAAGATATACAGCTGGGCACGGTGGCTCATGCCTGTAATCTCAGCACTTTGGGAGGCTGAGGCTTGAGCCCAGGAATTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGCCTCTACCAAAAATACAAGTAACTGGGTGTGGTAGCACGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGGATCAATTGAGCCCAGGAGGTGGAAGCTGCAGTGAGCCTTGATCATGCCACTGCATTCCAGCCTGTGCGACAGAGTGAGACCCTGTCAATAAATACATAAATAAGTAAATAAAGTAGATAAATACTCATATGGGGGCCTACATAGAACATCGACTTTTATATCCCTGAAAATGGCCCATGTTTGTTCCATAAACATAGTCTGTGAAACTTTGGTTTATTTTCAAATGCCTTTTACCTTCACTCAGAAAAAAGCAAAGCCTAGCTGTGGATACCATATGCCATTGGTTTACCATTCAGAGGCAGCGTCAGGGCGTGGAAGCTTTGGCTGCTGTTCTTGCTTTGAGACCTGTAACTGCTTCTGAACCACAACTCTGCCTCCGCACCTTCCCTAGCATGTGAGGTCTTTGAGAACTGGGTGCGTAGCTGATTGACTTCTGTGCCCTGAACACCCACATGGCTGCTCGGAGACTCGCCCACAGGGAGAACATAAACTTCTATTCACTGTGCACACATCCTCCCTCAGTGACAGCTTCCCTAACACTTTTCTTGGTGGGCCTTCATGTTACAG
Seq C2 exon
CCCTCGAATTCCCGGCCTGCACACAACTCTACTGACTTGGACCCATTTAAATTCCGCTGGTTGATCCCCATCTCCGCGCTTCAAGTCAGACTGGGGAATCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146426:ENST00000318981:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains