HsaINT1044640 @ hg38
Intron Retention
Gene
ENSG00000187054 | TMPRSS11A
Description
transmembrane protease, serine 11A [Source:HGNC Symbol;Acc:HGNC:27954]
Coordinates
chr4:67918973-67922926:-
Coord C1 exon
chr4:67922755-67922926
Coord A exon
chr4:67919233-67922754
Coord C2 exon
chr4:67918973-67919232
Length
3522 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TAATTTCTAACCTTTTCCAGGTA
3' ss Score
8.9
Exon sequences
Seq C1 exon
GTTGTGGTAAACGAGTTGTTCCATTAAACGTCAACAGAATAGCATCTGGAGTCATTGCACCCAAGGCGGCCTGGCCTTGGCAAGCTTCCCTTCAGTATGATAACATCCATCAGTGTGGGGCCACCTTGATTAGTAACACATGGCTTGTCACTGCAGCACACTGCTTCCAGAA
Seq A exon
GTAAGTTATTGACCTTAAGTTAGAACCCACTTCTGCTAAAAAGCCCTGAGTTTTGTCATATTCTTGGTAACAATTAATGTCTCAAATATTACTGAAGTAAAATAAGAAAAAGTTATTTCAGGTTCTTTTCTAAAATAATGTTACACTTGCATACTTAATCAGAAATTTGATGGGAATAAGTAACAGTCATTATCCTAGTATCCATCAATCATTTCCTCAAAGTTTTTAATAAGGAAACTGTGTAAAGAAATCAGAACTATTTTGTGACATCCTAACACAAAATATTCACTAATAACATGTACCATTAATCTTTTGTCAAACAATGCTCTCCACTTAAAACTAGTGTCTGTTTCTGCCAAACACTTGGGCCAGTCTCATACTGATCTTAAATAATCAAACTAATTCCAAAGTAAAATGGAAATTTTCAATAAATGCCGGAAGTTGGTAACCGTGATGATGGAGAACTGCAGATCAAATTTAGAGCATTGACATATGAAGATCTGTGGAATCAGAACAGTTTACAACCAAAATGAGAGATTGCTAGCATGATAAAGACAGGCACTTCAAAAGAGATTCCTCGGAGTATCAAAGGATTCATAGAGGCCCTTGGGCCACTCAATGTGACCTTCCCATAATAGAGCATCTCTTCACAATAGTGACACAAAAGACAAAGCTGAAGTGAAGAATAGCAAATTGTGCTATCCTATAATTGTTTCTGAATGCATACATTTTATTAAATATATGATTAAATGACTTTTTATAACTTTTAATCTTACTTTTCAAGATAATAACCAGTCATTTTTATCACTATTACATTTAGAATTTTAGATTTGTTTCTAAGTAGATTAACTGTATCGCCTTTCTTCTTCATTGCCAATTATTACAGTAATAACAAAGACTTCTTGAGTATCTCTATATAATAGGTGGCAGCAGGATTTAGTGGGAAAAATATGTCCCAGGCAGTTGGAGAGCTGGGCAAATTATTGAACCTTAGTGTATTAGGTAATAGATAGGCTAGATCTTTTCACATTCTTTTTGACCTATAAAATTCTAACTTTTGTTACTATAATAAATTTCATTTGCCTAGGAGCATAAATCTTTATAGAGACTCTTAATATTCCAAAGAATATACATATTAAGAATCTAGGCTTGGCATGGTGGCTCATGCCTGTAATCCCAGCATTTTGGGAGGCCGAGGCAAGAGGACCACTTGAGCTCAGGAGTTCAAGACCAGCTTGGGCAAGATAGTGAAACCCCATTGGGCATGGTGGTGCCTACCTATCATCCCAGCTACTTGGGAGGCTAACGCAGGAGGATCCCTTAAGCCCAGGAGTTTGAGGCTCCTGCAAGCTATGATTGCACCACTGCACTCCAGCCTGAGTGACAATGCAAGACCCCATCTTAAAAAAATAGTAATATATTTTTAAAAATAATCTACATAAATTCTTAATGTTTGAAAGATGTGAGAGCTCAGTAAGCTGATATATTAGAAAGCCAGAAATCCCTTATGCTGGTGTCTGGTTTTTCAAAGTAATGGGAAACTTACTTTGCCAAAGTTAGCCATTTTTGTGGTAGATAGTTCTATTTTTGCAAATATCTTTATAGCATTGAACACCAAATCTATACTCTATTAACTTCTACCATCAATATTTGTTTTTCTTTTAATCTGGAACAACAGGAACCAATTTTATTTCTTCATTCATATAACAGCTATTCTTTAGTTTCTCTTTTTCAGACCAAACATAAAATGAGGGAGAATATCCAAACCATAAGTGAAAATAAATATCATTACTGTGAGCTTTAGTTTGCTAAGGATAATGACCTCCAGCCCTATCCATGTCCCTGCAAAGGGCATGATTTTGTTCTTTTTATGGCTGCATAGCATTCCATGGTGTATGTATACCACATTTTCTTTATCCAGTCTATCACTAATGGGCATTTAGGTTGATTCTATGTCTTTGCTATACCGAAGAGTGCTAGAGGGAGAGGATCAGGAAAAATAACTAATGGGTACTAGGCTTAATACCTGGGTGATGAAATAATATGTACAACAAAACCCCATGACACAAGTTTACCTGTGTAACAAACCTGCACATGTAACCCTGAACTTTGAAAAAAGTATATATATGCACACACATATATATGCATACATATATATGTGTGTATATATATGCATATATGTGTGTGTGTATATATAAAAAAAAATATATATATATATATATATATAATTACCTCATTTTTCCAGAACCAACTTCCAGATGCCCTACCACATTGGTTCTTATTCTCTGAACATTCGAGACTTTGTCAGTGTCTTCCTTAAAATATGCTTCCAATAACTAAATACACCAAGACAGATGTGTGACTAGTGTCACACATAACAAAATAAAGCAGGAAGTCTTCTGAAAAATACAAATAATGTAAATTGGTGGGAGACAGTGTTTTATAAAGGGAAGAGCAGAGAGAGGCAGGCAGATATGTGATGTGAATCAAATAGTTTAACCTATCCAGGCTTTATTTTCCTTAAGTATAAAACACAGTCTTTACTAGATGATCTTTCATTGCTACTAAATGATTTTTCCGATTCCTGTATGTACCATAATCCACCCATTGCCCAAGCCCACAAGCTAGAAGTCAACCGCATTTACCACATTTGATCATCTCTCAAAGGACTATGCAGTCATCTAATAGACTTTACCACATCCATTCTTGACCTTCAAGAATCTACTCCCCAGAAAGAACCAACATGTTTTTTAAAAATGTAAATGAGACTACATTATTCTCTGGCTTAATTATCCAGTAGATTCCCATATCACTTCAATAAAATTTAAGCACTTTATCATGACCTATAAAACACTCTAAAATCTAGTCCCTGCTTACCTCTCCAAGCTCACCCCCAACCATTCTTTCCCTTGTGTTCTGACTGCAGCCCATCCAACCCAAGACCTTGGGATTTTTGCCTGGAAACTTGTTTCCCTCATCTCCTCACACTGACCCTCTTTTACTATGTCTTAGCCCAAATGCGTTATCAAAATAATCATAATGACCTGTTAGTACTCTATTCCGTTACCCTATTTTATTTTGTTCATAGCCTTTATCAATGTTTAAGATTATTTATCTATTTGTTTGCTTGCTTTGATCCTTTTCCTTCTCTGGAATCTTATACTCCTGTGAGCAGGCACCTTAGGTCCTGTTCATCACTTTATCCCCAGCAGTTCAGATAAGGCTCAGCACACAGATGCTCAGTAAATATTTGTGGAAGGGATAAATGAATGATATTTTATGTGTATTACAGTTCTAAAATTCAATAGTTTTGTATTAAATATCAGTTCTAATATGGCATTTATATGATTTTATCTTTCAAAACATTAGCAATAGATTATATTTAAATGATAAAAGAAAACTATAACTGCAGCCAAGTATTCTCAGGATTGTATTTCTCTTATATTAGCCTAAATGCAATTAATCTAGCTCATATACTTTGGGCAGCTTATATATATTCTGTTAATTTCTAACCTTTTCCAG
Seq C2 exon
GTATAAAAATCCACATCAATGGACTGTTAGTTTTGGAACAAAAATCAACCCTCCCTTAATGAAAAGAAATGTCAGAAGATTTATTATCCATGAGAAGTACCGCTCTGCAGCAAGAGAGTACGACATTGCTGTTGTGCAGGTCTCTTCCAGAGTCACCTTTTCGGATGACATACGCCAGATTTGTTTGCCAGAAGCCTCTGCATCCTTCCAACCAAATTTGACTGTCCACATCACAGGATTTGGAGCACTTTACTATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187054:ENST00000334830:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=75.9)
A:
NA
C2:
PF0008921=Trypsin=FE(38.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains