HsaINT1044846 @ hg38
Intron Retention
Gene
ENSG00000168477 | TNXB
Description
tenascin XB [Source:HGNC Symbol;Acc:HGNC:11976]
Coordinates
chr6:32045006-32046456:-
Coord C1 exon
chr6:32046175-32046456
Coord A exon
chr6:32045327-32046174
Coord C2 exon
chr6:32045006-32045326
Length
848 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCTGGGCTTCTCCCACGCAGCCC
3' ss Score
7.88
Exon sequences
Seq C1 exon
CTCCCCTGGAGAAGGAGCTACCTCCCCACCTGGGGGAACTGACCGTGGCTGAGGAGACCTCCAGCTCTCTGCGCCTGTCCTGGACGGTAGCCCAGGGCCCCTTTGACTCCTTCGTGGTCCAGTACAGGGACACGGACGGGCAGCCCAGGGCAGTGCCTGTGGCCGCAGACCAGCGCACAGTCACCGTAGAGGACCTGGAGCCTGGCAAGAAATACAAGTTTCTGCTCTACGGGCTCCTTGGGGGAAAGCGCCTGGGCCCGGTCTCTGCCCTGGGAATGACAG
Seq A exon
GTGAGGCTGCTGTGCCTGGCTATAGCAAGCCAGCTTGTGTGGGTTTCCTTGTGCATTTGGGCTGAAGACAAAGATGACTGCAGGAGTGGGCAGGCCGGAGTGGGGCGCCCTGGCCTGTCCCCAGGAAGGAGGAGGAGTCTGCAGCCCTGTGGGCTTCAACATCCATCAAGGAGTCCAGAGCAGGAGCCAGGCCAGGCGGGAGGGAAAGGCCCTGGGAGGGGCTCTCTAATCTCCCAGCCCCGACTCTGCCCCGTCACTGCCACTGCTCCTCATTACTCGCTGGGGCTGCTGTCGCCTCCCCGAAGGGTGGCCTTGTCCAGATAGCGGCAAACCTCCCTGCCGTGGATGAGTCAGGAGCATTTTCTTAAGAGGAACATCACTGGAAAACAAAATGAGCGGGGACACAGAAACCAACAGCAGTGGCTGCATTTGTGGTACAGGCTCCTCTTCCAGAGCTCGCTGATGCCCACCTCAGACAGGCCTGACCACGGCACGGCTGGTGGGATTTGCCAGTCACCTCAACCAGCCAGTTCCACCCTCAGCTTCTCTCAGAAGGGAGCACCACACTCCTCAAGCTCAGTGAATGTATCCCGGCATGGGTGGGGCCAGAGCCTGTGATATCTCGAGGTGGGCTCGGCAGGACACCGGGGTGTGGAAGGGGGAAGCGAGCACCTGACTCAGACAGCGCGGGAGCTCGCAGGAGTCACGAGGCCACAGCGACTTCATTGTCTGACTGGGCCTGGACCTATAAACTTCCCACCTCAGCCTTGGGCCAAGCCTGGAAGATAAAAATGGAGCACCCCATGGCGCCCCTCACTCAGATTCTCCCCTGGGCTTCTCCCACGCAG
Seq C2 exon
CCCCAGAAGAGGACACACCAGCCCCAGAGTTAGCCCCAGAGGCCCCTGAGCCTCCTGAAGAGCCCCGCCTAGGAGTGCTGACCGTGACCGACACAACCCCAGACTCCATGCGCCTCTCGTGGAGCGTGGCCCAGGGCCCCTTTGATTCCTTCGTGGTCCAGTATGAGGACACGAACGGGCAGCCCCAGGCCTTGCTCGTGGACGGCGACCAGAGCAAGATCCTCATCTCAGGCCTGGAGCCCAGCACCCCCTACAGGTTCCTCCTCTATGGCCTCCATGAAGGGAAGCGCCTGGGGCCCCTCTCAGCTGAGGGCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168477:ENST00000375244:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.442 A=NA C2=0.491
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=86.3)
A:
NA
C2:
PF0004116=fn3=WD(100=75.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCACCGTAGAGGACCTG
R:
CCAGGCCTGAGATGAGGATCT
Band lengths:
343-1191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains