HsaINT1044852 @ hg38
Intron Retention
Gene
ENSG00000168477 | TNXB
Description
tenascin XB [Source:HGNC Symbol;Acc:HGNC:11976]
Coordinates
chr6:32042951-32043318:-
Coord C1 exon
chr6:32043175-32043318
Coord A exon
chr6:32043082-32043174
Coord C2 exon
chr6:32042951-32043081
Length
93 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CTTCCTGCTTTCCCTCCTAGGGC
3' ss Score
12.03
Exon sequences
Seq C1 exon
CCCCGCCTCTGCAGGCGGAGACCCCAGGCAGCGCGGTGGACTACCCCCTGCATGACCTTGTCCTCCACACCAACTACACCGCCACAGTGCGTGGCCTGCGGGGCCCCAACCTCACTTCCCCAGCCAGCATCACCTTCACCACAG
Seq A exon
GTAGGGTCTGTGGGGTGTGTGGGACAGGGAGAGGAGGTAGAGGGAGCCAGGTTGGGCCTCATCCCCATCTCCTCTTCCTGCTTTCCCTCCTAG
Seq C2 exon
GGCTAGAGGCCCCTCGGGACTTGGAGGCCAAGGAAGTGACCCCCCGCACCGCCCTGCTCACTTGGACTGAGCCCCCAGTCCGGCCCGCAGGCTACCTGCTCAGCTTCCACACCCCTGGTGGACAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168477:ENST00000375244:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.449 A=NA C2=0.523
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(51.9=85.7)
A:
NA
C2:
PF0004116=fn3=PU(51.9=93.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCATGACCTTGTCCTCCAC
R:
CTCAGTCCAAGTGAGCAGGG
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains