HsaINT1044856 @ hg38
Intron Retention
Gene
ENSG00000168477 | TNXB
Description
tenascin XB [Source:HGNC Symbol;Acc:HGNC:11976]
Coordinates
chr6:32042266-32042606:-
Coord C1 exon
chr6:32042455-32042606
Coord A exon
chr6:32042363-32042454
Coord C2 exon
chr6:32042266-32042362
Length
92 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
TGCCCCCACTTGCTTCCCAGGTG
3' ss Score
10.27
Exon sequences
Seq C1 exon
GTGGGCTGCGGATCCCCTTCCCCAGGGACTGCGGGGAGGAGATGCAGAACGGAGCCGGTGCCTCCAGGACCAGCACCATCTTCCTCAACGGCAACCGCGAGCGGCCCCTGAACGTGTTTTGCGACATGGAGACTGATGGGGGCGGCTGGCTG
Seq A exon
GTGGGTGGCATTGGGAAGCCCAGGGGTCTGTGCAGGGCAGGGTCTGTTGCCCCGGGAGCCAGAGGCTGATGGTGCCCCCACTTGCTTCCCAG
Seq C2 exon
GTGTTCCAGCGCCGCATGGATGGACAGACAGACTTCTGGAGGGACTGGGAGGACTATGCCCATGGTTTTGGGAACATCTCTGGAGAGTTCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168477:ENST00000375244:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(21.0=86.3)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCTTCCTCAACGGCAAC
R:
CCAGCCAGAACTCTCCAGAGA
Band lengths:
175-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains